Pseudomonas syringae pv. tomato DC3000, PSPTO_4825

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
GATGTGCGTTTGCGTCTGATCGCTGTGGGTTCACGCATGCCCAAGTGGGTGGAAGAAGGTTGGCACGAGTACGCCAAGCGGATGCCTTCCGAGCTTGCGC TTGAACTGGTGGAAATCCCGCTCAATACCCGTGGCAAGAACGCCGATGTCGCGCGCTTTATCCGTCAGGAAGGCGAAGCGATGCTGGCCAAAGTGCAGCC GGGTGAGCGGATTGTCACGCTGGAAGTGCAGGGCAAACCGTGGAGCACTGAGCAGTTGGCGGTCGAACTCGATCGCTGGCGCCTTGATGCGCGCACGGTC AACCTGATGGTAGGCGGTCCCGAAGGGTTGGCACCGGAGGTCTGTGCCCGCAGTGAGCAGCGCTGGTCGCTGTCACCGCTGACCTTGCCGCACCCGCTGG TACGCATTCTGATCGGCGAGCAGATGTATCGCGCCTGGACAGTTCTGTCCGGGCACCCTTATCACAAGTAGCATCGTCCTTTACTGTGAACACGGCCTAA
DNA Sequence for Gene
>PSPTO_4825
ATGTCTCAACCGATCCGCCTAAAAGACCACGAAAAAGACGCACGTCTGGTGCGCGGCAGGGTCGTGTTCGGTGCTGTGGCGGTCGTGTTGCTGGTGTGCG TACTGATTGCCCGTCTGTATTACCTGCAGGTCATCCAGTACGACTATCACTCCACGCTGTCGGAAAACAATCGTGTTCACGTTCAGCCCATTCCGCCCAG CCGTGGCCTGATCTACGACCGCAACGGCGTTGTGGTGGCGGATAACCGGCCCAGTTTCAGCCTCAGCATGACCCGCGAGCGTTCCGGCGAATGGTCCAGC GTGCTCGACACCATCGTCGAGATCCTGCAGCTCACCCCTGACGACCGGATCATTTTCGAAAAACGCATGAAGCAGGGGCGTCGGCCTTTCGAGCCGGTGC CGATCCTGTTCGAGTTGAGCGAAGAGCAAATCGCCCTGATCGCCGTCAACCAGTTCCGCCTGCCGGGCGTCGAAGTGGTGGCGCAACTGGTACGCCACTA CCCGCAAGGGCCGCATTTTGCGCACTCGGTGGGCTACATGGGGCGGATCAACGAAAAAGAGCTCAAGAGCCTCGACCCGATCAATTACAGCGGTACGCAC CATATCGGCAAGACCGGTATCGAACGCTTCTACGAAGCCGAACTGCATGGTCAGGTCGGCTACGAAGAGGTCGAAACCAACGCTCGTGGCCGCGTGCTGC GCGTGCTTAAACGCACTGACCCGATCCCCGGCAAGGACATCGTCCTGAGCCTGGACATCAATCTTCAGGAAGCCGCCGAAGCGGCGCTGGGCGGGCGTCG TGGTGCGGTGGTTGCGCTGGACCCTTCTACCGGTGAAGTGCTGGCGATGGTCAGTGCGCCCAGCTTTGATCCGAACCTGTTCGTGACCGGTATCAGCTTC AAGGCCTACGCAGAGCTGCGCGATTCCATCGACCGGCCACTGTTCAACCGCATTCTGCGCGGCCTTTACCCACCCGGTTCGACCATCAAGCCTGCCGTGG CGATTGCAGGGCTGGACTCCGGCGCTGTGACGCCTGGCTCGAGGGTCTTCGATCCTGGGTATTACCAACTGCCCAATTACGATCACAAGTACCGCAACTG GAACCGCACCGGCGACGGCTGGGTGGACCTGGATACGGCGATCATGCGTTCAAATGACACGTACTTCTACGATCTGGCACACAAAGTGGGCATTGATCGA CTTGCCGCCTACATGAACAAGTTTGGTATCGGGCAGAAGGTGTCGCTGGACATGTTCGAAGAGTCTCCCGGCCTGATGCCGTCCCGTGAATGGAAGCGCG CCACGCGCCGTCAGGCCTGGTTCCCGGGCGAAACCCTGATTCTCGGGATCGGTCAGGGCTACATGCAGGCAACCCCGTTGCAACTGGCCCAGGCGACCGC GCTGGTGGCCAACAAGGGTGTCTGGAACCGTCCGCATCTGGCCAGGACCATCGAGGGCAAAGCGCCGGTGGACGAAAACCCGATGCCGAACATCGTGCTG CGTGATCCGGCCAACTGGGGACGGGTCAACCACGGCATGCAGGAAGTGATGCACGGCGCCCGCGGCACGGCGCGCAAGGCTGCCATCGGTGCGCAATACC GGATTGCCGGCAAGAGCGGTACGGCGCAGGTCGTTGCGATCAAGCAAGGCGAGAAATACGACCGCACCAAGGTGCAGGAACGTCACCGTGACCACGCTTT GTTCGTCGGTTTTGCGCCGGCCGACAACCCGAAAATCGTTGTGGCAGTCATGGTCGAGAACGGCGAGTCCGGCTCCGGCGTGGCTGCACCTGTAGTTCGT CAGGTCCTGGACGCCTGGCTGCTCGACGAAAACGGCCATCTCAAGCCTGAGTACGCCGGTTCCCTGAATCTGGAGGCTGCGGCCCGTGAAGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTCGACCGCATCCTGTCCAGCGAAGACGTGATGCGTCGCCGCGCCACGTTTCTGCAGCGCATTCATATCGATGGCCCGTTGCTGATCCTGCTGCTGACC CTGGCGGCGGGCAGCCTGTTTGTCCTGTATTCGGCCAGCGGCAAGAACTGGGACCTGCTGATCAAGCAGGCCAGTTCGTTCGGCATCGGTCTGGTGGCGA TGGTGGTGATTGCCCAGCTGGAGCCCCGTTTCATGGCGCGCTGGGTGCCGGTGCTTTATGTGATTGGCGTGCTGTTGCTGGTGGTTGTGGATGTGATGGG CCATAACGCAATGGGTGCGACCCGCTGGATCAATATTCCCGGCGTGATTCGCTTCCAGCCTTCGGAGTTTCTCAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGTCCAAGCGCACGTTGCCGCCGCACCTCAAGCATGTCGGGGTCAGTCTGGCGCTGATCGGTGTGCCGTTCATTCTGATCGTGCGCCAGCCCG
Amino Acid Sequence
>penicillin-binding protein
MSQPIRLKDHEKDARLVRGRVVFGAVAVVLLVCVLIARLYYLQVIQYDYHSTLSENNRVHVQPIPPSRGLIYDRNGVVVADNRPSFSLSMTRERSGEWSS VLDTIVEILQLTPDDRIIFEKRMKQGRRPFEPVPILFELSEEQIALIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEKELKSLDPINYSGTH HIGKTGIERFYEAELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDINLQEAAEAALGGRRGAVVALDPSTGEVLAMVSAPSFDPNLFVTGISF KAYAELRDSIDRPLFNRILRGLYPPGSTIKPAVAIAGLDSGAVTPGSRVFDPGYYQLPNYDHKYRNWNRTGDGWVDLDTAIMRSNDTYFYDLAHKVGIDR LAAYMNKFGIGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVANKGVWNRPHLARTIEGKAPVDENPMPNIVL RDPANWGRVNHGMQEVMHGARGTARKAAIGAQYRIAGKSGTAQVVAIKQGEKYDRTKVQERHRDHALFVGFAPADNPKIVVAVMVENGESGSGVAAPVVR QVLDAWLLDENGHLKPEYAGSLNLEAAAREE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site