Pseudomonas syringae pv. tomato DC3000, PSPTO_4561 (dppA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.10.105.10 - - - 288 507 0.0
Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPR000914 Solute-binding protein family 5 domain 70 449 5.7E-98
Gene3D G3DSA:3.90.76.10 - - - 37 208 0.0
PIRSF PIRSF002741 MppA IPR030678 Peptide/nickel binding protein, MppA-type 16 530 7.2E-111
Gene3D G3DSA:3.40.190.10 - - - 209 519 0.0
PANTHER PTHR30290 PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER IPR039424 Solute-binding protein family 5 20 527 8.5E-112
CDD cd08493 PBP2_DppA_like - - 25 515 0.0
FunFam G3DSA:3.40.190.10:FF:000036 Dipeptide ABC transporter, substrate-binding protein - - 206 295 1.6E-31
FunFam G3DSA:3.10.105.10:FF:000002 Dipeptide ABC transporter, substrate-binding protein - - 287 506 2.5E-101
FunFam G3DSA:3.90.76.10:FF:000002 Dipeptide ABC transporter, substrate-binding protein - - 45 205 5.4E-79
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 26 528 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.