Pseudomonas syringae pv. tomato DC3000, PSPTO_4560

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4560
NCBI Old Locus Tag	PSPTO4560
Name	Synonym: PSPTO4560
Replicon	chromosome
Genomic location	5153159 - 5154538 (+ strand)

Cross-References

RefSeq	NP_794313.1
GI	28871694
Entrez	1186243
INSDC	AAO58008.1
NCBI Locus Tag	PSPTO_4560
NCBI Old Locus Tag	PSPTO4560
UniParc	UPI0000009374
UniProtKB Acc	Q87WI6
UniProtKB ID	Q87WI6_PSESM
UniRef100	UniRef100_Q87WI6
UniRef50	UniRef50_A0A0B7D6X5
UniRef90	UniRef90_Q0EE41

Product

Feature Type	CDS
Coding Frame	1
Product Name	outer membrane porin, OprD family
Synonyms
Evidence for Translation
Charge (pH 7)	-11.59
Kyte-Doolittle Hydrophobicity Value	-0.476
Molecular Weight (kDa)	50.7
Isoelectric Point (pI)	5.02

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 16 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004088 (487 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4560 Search term: outer membrane porin, OprD family

Human Homologs

References