Pseudomonas syringae pv. tomato DC3000, PSPTO_4501 (carB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGAAACCGAAGTGCCAGTATTCGGCATCTGCCTTGGTCACCAGTTGCTGGCGCTGGCTGCGGGTGCCAAGACCGTGAAAATGGGCCATGGCCACCA CGGTGCAAACCACCCGGTTCAGGATCTGGACACCGGCGTTGTAATGATCACCAGTCAGAACCACGGTTTTGCGGTTGATGAATCGACGTTGCCGGGCAAC GTTCGCGCTATCCACAAGTCGCTGTTCGACGGCACCCTGCAAGGTATCGAGCTGACTGACAAGAGCGCGTTCAGCTTCCAGGGTCACCCTGAAGCAAGCC CAGGCCCGAACGATGTAGCGCCCCTGTTTGACCGCTTTATCGACGCCATGGCCAAGCGACGCTGACCGGTTGCCTTGAGACTGTAAACGCAGGTGCCCAG GGCGGCCCCGGACCACACGTCCGGTTGCTGCCGCCCAGGCCACCTCAGAAAAATGTTCAAGACGGCTTGCCGACTGACCTGCGGATTTGAGTGACAACCC
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| DNA Sequence for Gene |
>PSPTO_4501
|carB
ATGCCAAAACGTACAGATATTAAAAGCATCCTGATTCTCGGCGCCGGCCCCATCGTGATCGGCCAGGCCTGTGAATTCGACTACTCCGGCGCCCAGGCTT GCAAAGCCCTGCGCGAAGAGGGCTATCGAGTTATCCTGGTGAACTCCAACCCGGCGACCATCATGACCGACCCGGCCATGGCCGACGCCACCTACATCGA GCCGATCAAATGGCAGACCGTTGCCAAGATCATCGAGAAAGAGCGCCCGGACGCGTTGCTGCCAACCATGGGCGGCCAGACCGCACTGAACTGCGCACTG GATCTGGAGCGTGAAGGCGTTCTGGAGAAGTTCGGCGTAGAGATGATCGGTGCCAACGCCGACACCATCGACAAGGCTGAAGACCGTTCGCGTTTCGACA AGGCCATGAAGTCCATCGGCCTGGCGTGCCCGCGTTCCGGCATCGCGCACAGCATGGAAGAAGCCAACGCGGTTCTTGAAAAGCTCGGTTTCCCTTGCAT CATCCGTCCGTCGTTCACCATGGGTGGCACGGGCGGCGGTATTGCTTACAATCGTGAAGAGTTCGAAGAAATCTGCGCTCGTGGTCTGGACCTGTCTCCG ACCAAGGAACTGCTGATCGACGAATCGCTGATCGGCTGGAAAGAGTACGAAATGGAAGTTGTCCGCGACAAAAAGGACAACTGCATCATCGTCTGCTCCA TCGAAAACTTCGATCCGATGGGTGTGCACACCGGTGACTCCATCACCGTTGCCCCGGCACAGACCCTGACCGACAAGGAATATCAGATCCTGCGTAACGC CTCGCTGGCGGTACTGCGCGAGATTGGCGTTGAAACGGGTGGTTCCAACGTTCAGTTCGGCATCTGCCCGGACACCGGCCGTATGGTCGTCATCGAGATG AACCCGCGCGTGTCGCGTTCCTCGGCGCTGGCTTCCAAGGCGACCGGCTTCCCGATTGCCCGGGTTGCGGCCAAGCTTGCAGTGGGTTACACCCTCGACG AGCTGTCCAACGAAATCACCGGCGGCAAGACCCCGGCGTCCTTCGAGCCATCCATCGACTACGTCGTTACCAAGCTGCCGCGCTTCGCGTTTGAGAAGTT CGCCAAGGCCGATGCACGCCTGACCACGCAGATGAAGTCGGTGGGTGAAGTCATGGCCATCGGCCGTACTTTCCAGGAATCCCTGCAGAAAGCGCTGCGC GGCCTGGAAGTTGGTGTGTGTGGCCTTGATCCGAAGCTGGACCTCAGCCATCCGGAAAGCATGAGCACGCTCAAGCGCGAGCTGACCGTGCCGGGCGCCG AGCGTATCTGGTACGTCGCCGATGCGTTCCGCGCAGGCATGACTGTCGAAGAAATCTTCGCCATGAACATGATCGACCCCTGGTTTCTGGTCCAGATCGA AGATCTGGTCAAGGACGAGGAGAAGATCAAGACGCTTGGCCTGTCGGCAATTGATCGCGACCTGATGTACCGTCTCAAGCGCAAGGGCTTCTCCGATGCA CGCCTGGCCAAACTGGTCGGCGTTACCGAGAAAAACCTGCGCACGCACCGTCACAAGCTGGATGTGTTCCCGGTCTACAAGCGCGTCGATACCTGCGCGG CCGAGTTTGCAACCGACACCGCGTACCTTTACTCGACGTACGAAGAAGAGTGCGAAGCCAACCCTTCGACGCGCGACAAGATCATGATCCTCGGCGGTGG CCCTAACCGTATCGGCCAGGGTATCGAGTTCGACTACTGCTGCGTGCACGCAGCCCTGGCGCTGCGTGAAGACGGGTACGAGACCATCATGGTCAACTGC AACCCGGAAACCGTCTCCACCGACTACGACACCTCTGATCGTCTGTACTTCGAGCCGGTCACCCTGGAAGACGTGCTGGAAATCGTACGCGTCGAGAAGC CCAAGGGCGTGATCGTGCAGTACGGCGGCCAGACCCCGCTGAAACTCGCCCGTGCCCTGGAAGCCGCCGGCGTCCCGATCATCGGCACCAGCCCGGACGC CATCGACCGCGCAGAAGACCGCGAGCGCTTCCAGCAGATGGTCGAGCGTCTCAACCTGCGTCAGCCGCCAAACGCCACCGTGCGCAGCGAAGACGAAGCG ATTCGTGCCGCCGCGAAAATCGGTTACCCGCTGGTCGTGCGTCCGTCCTATGTACTGGGCGGCCGGGCGATGGAAATCGTTTACCAGGAAGACGAGCTCA AGCGTTACCTGCGTGAAGCGGTTCAGGTGTCCAACGACAGCCCGGTGCTGCTCGACCACTTCCTGAACTGCGCCATCGAAATGGACGTCGATGCAGTTTG CGACGGTACTGACGTGGTGATCGGCGCGATCATGCAGCACATCGAACAGGCGGGCGTTCACTCCGGCGACTCCGCCTGCTCGCTGCCGCCGTACTCGCTG CCTGCTCACATCCAGGACGAGATGCGCGAACAGGTCAAGAAGATGGCCCTGGAACTGGGCGTGGTGGGCCTGATGAACGTACAGCTGGCACTTCAGGGCG AAGACATCTACGTGATCGAAGTGAACCCGCGTGCATCGCGTACCGTGCCGTTCGTTTCCAAGTGCATCGGTGTTTCCCTGGCCATGATCGCTGCGCGCGT GATGGCGGGTAAAACCCTGAAAGAGCTGAATTTCACCAAGGAAATCATTCCTAATTTCTATAGTGTGAAAGAGGCCGTGTTCCCGTTCGCCAAATTCCCT GGCGTTGACCCGATCCTTGGCCCGGAAATGAAGTCGACCGGCGAAGTGATGGGCGTGGGCGACACCTTCGGTGAAGCGTTCGCCAAGGCTCAGATGGGCG CCAGCGAAGTGCTGCCGACCGGCGGTACTGCGTTTATCAGCGTACGTGATGACGACAAGCCGCTGGTTGAAGCGGTTGCTCGTGACCTGATCAACCTGGG TTTCGAAATTGTCGCAACAGCCGGAACGGCCAAGCTGATCGAAGCGGCCGGCCTGAAAGTGCGTCGCGTCAACAAGGTGACCGAAGGTCGCCCGCACGTG GTCGACATGATCAAGAATGACGAAGTCACCCTGATCATCAACACCACCGAAGGCCGTCAGTCTATCGCTGATTCCTACTCCATCCGTCGCAACGCCTTGC AGCACAAGATTTACTGCACCACTACCATTGCAGCAGGCGAAGCGATCTGCGAAGCGCTCAAGTTCGGCCCAGAGAAGACCGTGCGTCGCTTGCAGGACCT CCATGCAGGATTGAAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAAATACCCGATGACCGTTCAGGGCGCTCGCGCCCTGGAAGAAGAGCTGACTCACCTGACCAAGGTGATCCGTCCCAAATTGAGCCAGGACATTGGTAC TGCGCGCGAGCTGGGCGACCTCAAGGAAAACGCTGAATACCATGCTGCCCGCGAGCAGCAGGGTATGGTTGAAGCGCGTATTCGTGATATCGAAGGCCGT ATGCAGAACGCGGTGGTGATCGACGTTACGACTATTGCGCACACTGGCAAGGTGATTTTCGGCACGACAGTCGAAATCGCCAACGTCGAGACCGACGAAA GCGTTGTTTACCAGATCGTGGGTGAGGACGAGGCGGATATCAAGAAGGGCAAGATTTCAGTGGGTTCGCCCATTGCTCGCGCCTTGATTGCCAAGGAAGA AGGTGACGTCGTCGTGGTGAAAACGCCGAGTGGCGTTATCGAATACGAAATCATCGAAGTGCGTCATATCTGATGCAAGTGCCCGCCATGGCGGGCACTT
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| Amino Acid Sequence |
>carbamoyl-phosphate synthase large subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLPTMGGQTALNCAL DLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGIAHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSP TKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEM NPRVSRSSALASKATGFPIARVAAKLAVGYTLDELSNEITGGKTPASFEPSIDYVVTKLPRFAFEKFAKADARLTTQMKSVGEVMAIGRTFQESLQKALR GLEVGVCGLDPKLDLSHPESMSTLKRELTVPGAERIWYVADAFRAGMTVEEIFAMNMIDPWFLVQIEDLVKDEEKIKTLGLSAIDRDLMYRLKRKGFSDA RLAKLVGVTEKNLRTHRHKLDVFPVYKRVDTCAAEFATDTAYLYSTYEEECEANPSTRDKIMILGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNC NPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEA IRAAAKIGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDVVIGAIMQHIEQAGVHSGDSACSLPPYSL PAHIQDEMREQVKKMALELGVVGLMNVQLALQGEDIYVIEVNPRASRTVPFVSKCIGVSLAMIAARVMAGKTLKELNFTKEIIPNFYSVKEAVFPFAKFP GVDPILGPEMKSTGEVMGVGDTFGEAFAKAQMGASEVLPTGGTAFISVRDDDKPLVEAVARDLINLGFEIVATAGTAKLIEAAGLKVRRVNKVTEGRPHV VDMIKNDEVTLIINTTEGRQSIADSYSIRRNALQHKIYCTTTIAAGEAICEALKFGPEKTVRRLQDLHAGLKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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