Pseudomonas syringae pv. tomato DC3000, PSPTO_4486 (pnp)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4486
NCBI Old Locus TagPSPTO4486
Name
pnp
Synonym: PSPTO4486
Replicon chromosome
Genomic location 5052402 - 5054507 (- strand)

Cross-References

RefSeq NP_794240.1
GI 28871621
Entrez 1186167
INSDC AAO57935.1
NCBI Locus Tag PSPTO_4486
NCBI Old Locus Tag PSPTO4486
UniParc UPI000000932C
UniProtKB Acc Q87WQ8
UniProtKB ID PNP_PSESM
UniRef100 UniRef100_Q87WQ8
UniRef50 UniRef50_Q3IJ73
UniRef90 UniRef90_Q87WQ8

Product

Feature Type CDS
Coding Frame 1
Product Name
polyribonucleotide nucleotidyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -16.14
Kyte-Doolittle Hydrophobicity Value -0.012
Molecular Weight (kDa) 74.9
Isoelectric Point (pI) 4.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 659 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004385 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4486
Search term: pnp

Human Homologs

Ensembl 110, assembly GRCh38.p14
polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
E-value: 2.5e-110
Percent Identity: 36.0
Ensembl 110, assembly GRCh38.p14
polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
E-value: 2.5e-110
Percent Identity: 36.0

References

No references are associated with this feature.