Pseudomonas syringae pv. tomato DC3000, PSPTO_4451

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0001530 lipopolysaccharide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015920 lipopolysaccharide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03002
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR36504 LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA - - 5 180 2.8E-33
Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. IPR014340 Lipopolysaccharide export system protein LptA 4 172 23.436182
Gene3D G3DSA:2.60.450.10 Lipopolysaccharide (LPS) transport protein A like domain - - 26 176 3.0E-40
NCBIfam TIGR03002 JCVI: lipopolysaccharide transport periplasmic protein LptA IPR014340 Lipopolysaccharide export system protein LptA 25 172 1.8E-45
Pfam PF03968 LptA/(LptD N-terminal domain) LPS transport protein IPR005653 Organic solvent tolerance-like, N-terminal 34 145 3.5E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.