Pseudomonas syringae pv. tomato DC3000, PSPTO_4402 (lpxC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009245 lipid A biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 4 275 1.5E-107
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 134 277 2.58E-52
Gene3D G3DSA:3.30.1700.10 lpxc deacetylase, domain 2 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal 128 303 4.9E-72
NCBIfam TIGR00325 JCVI: UDP-3-O-acyl-N-acetylglucosamine deacetylase IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 2 298 2.9E-118
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 125 2.05E-43
FunFam G3DSA:3.30.230.20:FF:000001 UDP-3-O-acyl-N-acetylglucosamine deacetylase - - 1 127 8.2E-71
Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 2 279 46.831787
Gene3D G3DSA:3.30.230.20 lpxc deacetylase, domain 1 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal 1 127 5.8E-52
PANTHER PTHR33694 UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase 3 284 2.4E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.