Pseudomonas syringae pv. tomato DC3000, PSPTO_4304 (saxB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCGACAACGCCGCCAAGGTCAAGCTGACCCTGGAAGACAACAGCGTTTACGCTCAGGAAGGCAAACTGGAGTTCTCCGAAGTGTCGGTTGACCAGAC CACCGGTTCCGTCACTCTGCGCGCAGTCTTCCCCAACCCTGAACACCGCTTGCTGCCCGGCATGTTCGTTCACGCGCAATTGCAGGCAGGCGTCAGTGCG AAAGCCATTCTGGCACCGCAACAAGGCGTGACCCGCGACCTGAAAGGCACGCCGACCGCCATGATTGTCAATCAGGACAACAAGGTTGAATTGCGCACAC TGGTCGCCAACCGCACCGTGGGCAGCGACTGGCTGATCGAGGACGGCCTGAAAGAAGGCGATCGCGTGATCACCGAAGGTCTGCAATACGTCAAACCAGG CGCAGAAGTGAAAGCTGCCGAAGCGACCAACGTCAAAGGAGCAAACCCGGCACCTGCCCCGGCCACTGAAAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
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| DNA Sequence for Gene |
>PSPTO_4304
|saxB
ATGTCGAAATTTTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCTATTTCCAGCCTGCCGATCAACC AGTACCCAAGTATCGCGCCACCGGCCATTGCGATTCAGGTGACCTACCCGGGCGCTTCTGCGCAGACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA GCAGCTCAACGGCATCGACAACTTGCGTTATGTGAGTTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCAATCAGGGCACCAACCCG GATACCGCGCAGGTGCAGGTGCAGAACAAGCTCAACCTGGCGACCCCGCTGCTGCCACAGGAAGTGCAGCAACAGGGTATTCGCGTGACCAAGGCGGTGA AGAACTTCCTGATGGTTATCGGCCTGGTGTCCGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATCGTCTCGAACATGCAGGACCCGATTTC CCGGACCTCCGGTGTGGGCGACTTCCAGGTGTTCGGCTCCCAGTACGCCATGCGCATCTGGCTCGACCCGGCCAAGCTCAACAACTTCCAGCTGACCCCG GTGGACGTGCGAGACGCAATCACCGCGCAGAACGTTCAGGTGTCGTCCGGTCAGTTGGGCGGTCTGCCCTCGATAAGCGGCCAGCAACTGAACGCCACAA TCATCGGCAAGACGCGTCTGCAGACGGCTGAACAGTTCGGCAATATCTTTCTCAAGGTCAACACCGACGGCTCACAGGTTCGCCTCAAAGACGTCGCCAC CGTGGGCCTGGGCGCAGAGAACTACAGCACCGACTCGCAGTTCGACGGCAAACCGGCCTCGGGTCTGGCGATCAAGCTGGCCACCGGCGCCAATGCGCTG GACACCGCCAAGGCCATCCGCGCGACCGTTTCGTCGCTGGAGCCGTTTTTCCCGCCGGGCATGAAAGTGGTTTACCCGTACGACACCACGCCTGTGGTGA GCGAATCGATCAAAGGTGTGGTTCACACCCTGATCGAAGCCATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTACAAAACTTCCGCGCCACCGTGAT CACCACGCTGACGGTTCCGGTCGTACTGTTGGGCACCTTCGGCATCCTCGCGGGCTTCGGTTTCACCATCAACACCCTGACCATGTTCGGCATGGTACTG GCCATCGGCTTGCTGGTGGACGATGCGATTGTGGTGGTGGAAAACGTCGAGCGGGTGATGGAGGAAGAAAAGCTTTCTCCGCGTGACGCAACCATCAAAT CCATGACGCAGATCCAAGGCGCACTGGTTGGTATTGCGCTGGTGCTGTCGGCGGTGCTGCTGCCAATGGCGTTCTTCGGCGGCTCGACCGGTGTGATCTA CAAGCAGTTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTAGTGGTCGCGCTGATCTTTACCCCGGCGCTGTGCGCCACCATGCTCAAGCCTATC GACGAGAAGACCCACGGCCAGCCCAAGCGTGGTTTCTTCGGCTGGTTCAACCGCACCTTCGACCGCAGCGTTGTGAGTTACGAACGCGGCGTGGGCAACA TGCTCAAGCACAAGTGGCTGTCGTACCTGGGCTATATCGTGATCGTTGCCGGCATGGTCTTCATGTTCATGCGCATTCCCGCAGCGTTCCTTCCGGAAGA AGACCAGGGCGTTATCTTCGCTCAGATCCAGACACCGGCCGGCTCCTCGACCGAGCGGACGCAAGAAGTCATCGACAACATGCGTGAATACCTGCTGACC AAGGAAAGCGGTGCAGTGAAGTCGGTGTTCTCGGTGAACGGCTTCAACTTTGCGGGCCGCGGTCAAAGCTCGGCGATTGCATTTGTCATGCTCAAGCCGT GGGAAGAACGTGACGCCGAAAACAGCGTCTTCAAACTGGCAGAGCGCGCTCAGGGCTACTTCTTCAGCCTGCGTGATGCAATGGTGTTCGCCATCGTGCC ACCGTCGGTACTGGAGCTGGGTAACGCGACAGGCTTCGACGTCTACCTGCAGGATCAGGGCGGTGTCGGCCATGCAAAACTGATGGAAGCACGTAACCAG TTCCTCGGCATGGCCGCGCAGAGCAAGATTCTCGCCGGTGTGCGTCCGAACGGGCTGAACGACGAGCCGCAGTACCAGTTGCTCATCGACGACGAACGCG CCAGTGCGTTGGGCATTACCCTGTCGGACATCAACAACACCCTGTCCATCGCGTTGGGTGGCAGCTACGTCAATGACTTCATCGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGTGATGCAGGTGCCCGCATGACGCCTGAAGACTTGAAAAAATGGTACGTGCGCAACAGCGCGGGCGAAATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAGTGGACCTACGGTTCGCCAAAACTGTCGCGCTACAACGGCGTGGCGGCAGAGGAAATCCTCGGTACGCCGGCACCGGGCTACA GCAGCGGCGATGCAATGGCCGAAGTTGAAGCGCTGGCCAAGAAACTGCCGCAAGGAATCGGCATCTCCTGGACCGGTCTGTCCTACGAGGAGCGCCTGTC CGGCTCTCAGGCCCCTGCCCTTTACGCGCTGTCGTTGCTGGTCGTCTTCCTGTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATCCCGATCGCGGTCATT CTCGTGGTGCCGCTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGCGGACTGTCGAACGACGTGTTCTTCCAGGTAGGGTTGCTGGTCACAGTCG GGTTGGCGGCGAAGAACGCCATCCTGATCGTCGAGTTTGCCAAAGAGCTGCACGAACAGGGCAAGAGCCTCACCGATGCTGCGATCGAAGCCTGTCGCAT GCGCCTGCGCCCGATCATCATGACGTCCATGGCGTTCATCCTCGGCGTTGTGCCGCTGGCGATTTCCTCGGGCGCAGGTTCGGGCAGTCAGCATTCGATC GGTACAGGCGTAATTGGCGGTATGATCACAGCCGTCGTTCTGGCGATCTTCTGGGTGCCACTGTTCTTCGTATCGATTTCAGGGCTCTTCAAGAGCAAGC AGAAACATATTTCACACGATGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCATTGATCTCTCTTGCAGTTACCGCGTTCATACTCGGCGGCTGCTCTTTGATCCCCGAGTACAAGCAGCCGGAGGCCCCGGTCGCCGCACAATA CCCGCAAGGCCCGGCGTACTCGCCGGTCGAAGGGGCCAAAATGGCCGCTGCGGAGCAAGGCTGGCGTCATTTCTTCAATGACCCGGCGCTGCAACAGTTG ATCGAAACCGCGCTGCTCAACAACCGTGACCTGCGGGTCGCGGCGCTGAACATCGACGCCTACCGTGCGCAGTACCGCATCCAGCGTTCGGACCTGTTCC CGGCGGTCTCGGCCACTGGCAGCGGCTCACGTCAGCGCGTGCCTGCCGACCAGTCGCAGACCAGCCAATCGGCGATCAGCAGCAGCTACTCGGCAACGCT GGGCGTCAGCGCTTACGAGCTGGACCTGTTTGGTCGGGTGCGCAGCCTCAGCGAACAGGCGCTGGAAACCTACTTCTCCAGCGAAGAAGCGCGTCGCAGC
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| Amino Acid Sequence |
>isothiocyanate resistance protein SaxB; isochorismatase family
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVRDAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DEKTHGQPKRGFFGWFNRTFDRSVVSYERGVGNMLKHKWLSYLGYIVIVAGMVFMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDNMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDAENSVFKLAERAQGYFFSLRDAMVFAIVPPSVLELGNATGFDVYLQDQGGVGHAKLMEARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLLIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMTPEDLKKWYVRNSAGEMVPFS AFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGDAMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSI GTGVIGGMITAVVLAIFWVPLFFVSISGLFKSKQKHISHDEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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