Pseudomonas syringae pv. tomato DC3000, PSPTO_3990 (dinP)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGAAAGTGTCAACCCTTAATCTCGAAAGGAGGTAAATGAGTGGTGATGCGTGTTTTTCTCCACAGGGAGTTTTCGTCGCGAACCGGAGAAGCAAGCGT GAGCGAAGCACTTTTCAGGCGCGCACAAAAAAGGCCACTCTTTCGAGTAGCCTTTTTTGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCG GGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCGTCTGTGTGTCGGCATTCTACAGAGAGATGGCGGGGTGTCAATGGCTAGTTTTAAAAAAG TGCTTTTTCTTCAATCGCTTAGCGAGGCAGATCAACCGTTTGGTCCAGCACTGGTGCAGTTATGACTGGATTGTCGGGCCATAAAGGTCGCGCTTGTGGC CGGCTACGCGATTTTTCCGCTGCCTTTTGCATCATGGGGTGTTACTTGTTGATACGGGTGAGATACTGCGCAGCCATTGATTGCAAAATCCCATCAGGTC
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| DNA Sequence for Gene |
>PSPTO_3990
|dinP
ATGACGCAGCGCAAAATCATCCACATCGACTGTGACTGCTTTTATGCAGCCATCGAAATGCGTGACGAGCCCGAACTCGCCGGCAAGCCGCTGGCGGTGG GCGGCTCTGCGGAACGGCGCGGGGTGATTGCTACCTGTAACTATGAAGCGCGTGCGTATGGGGTGCGCTCGGCCATGTCGTCTCGCCATGCGCTCAAGCT CTGCCCGGACCTGACCATCGTCAAGCCGCGCATGGAGGCTTATAAAGAAGCCTCGCGGGAAATTCACAGCATCTTTCGTGATTACACCGACCTGATCGAG CCTTTGTCGCTGGATGAGGCGTTTCTGGACGTATCTGACACCCATCACTTTTCCGGCAGCGCCACGCGCATCGCCCAGGACATTCGGCGTCGGGTCTCGA ATCAGTTGCACATCACGGTTTCGGCGGGCGTGGCCCCCAACAAGTTTTTGGCCAAAATCGCCAGCGACTGGAAAAAGCCCAACGGTTTGTTCGTGATTAC GCCGGATCAGGTCGAGGATTTCGTTGCTTCGTTACCGGTGACCAAGCTGCACGGCGTCGGAAAGGTGACTGCCGACAAGCTGGGTCGGCTAGGAATCGTC GATTGTGCGGACCTGCGCAGCCGTAGCAAGCTCGCGCTGGTACGCGAATTCGGCAGCTTCGGCGAGCGTCTCTGGAGTCTGGCGCACGGGATAGATGACC GGCCGGTGCAAAACGACAGCCGACGTCAGTCAGTCAGTGTTGAAAATACTTACGACACAGATTTACCCGATCTGGCCGCCTGCCTGGAAAAGCTCCCCGC CTTGCTGGAAACCCTGGGTACGCGCATGGAAAGAATGGAGGGGCAGTACCGCCCCGGCAAACCGTTCGTCAAAGTGAAGTTTCATGACTTCACACAGACC ACGCTTGAACAGTCCGGGGCAGGCAGGGATCTGGGTAGCTATGAGCAGTTGTTGACGCAGGCGTTTGCCCGGGGTGGCAAGCCGGTTCGGTTGCTGGGCA TCGGCGTGCGTCTGCACGACCTGCGCGACGCTCATGAGCAGTTGGAGTTGTTTTCAACGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAGGACTGCGGTTGCATCCCGCAGCCGCTCGCATTACTCGCTTTGGGCGGGAACCGCGACCAGTCGACCAGCGTCCCTGGCAAGTGATTTGAGAAACT CGCCCTGCAACTGCGGATCGTTGCGCGTGAGTTCGATCAGGCTTTGCTCAAGCTCGCTCGCTTCCTCTTCCAGGCCCATGTCAGAGAGGCGTTTGACTCG ATGCACCCACTGGCTGACCTCGTCATCTTCCAGGTCGTCGTAGATCAGCGCATGCGCCTCCAGCAATTTACCGCGCAGAGAATGGCTGATCGGCAAGCTG GCATTGGCGTGTGCGCTGTCCTGATCATCTTCGACATTGATGTAAATGCGCGTGATGCGGCTCAGGTCCTGTTCGGCAAACGGACTGTCCAGCAGATTCA GGCGCAACACGCCGTTGCGGTCAGTGCTCATTTCATGCGTTTGGTTGCCGGCCTTGACCATCACCGGGCGCTCATTCCATGGCAGCGTGGAGTTCTCGAT
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHIDCDCFYAAIEMRDEPELAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRHALKLCPDLTIVKPRMEAYKEASREIHSIFRDYTDLIE PLSLDEAFLDVSDTHHFSGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVASLPVTKLHGVGKVTADKLGRLGIV DCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQSVSVENTYDTDLPDLAACLEKLPALLETLGTRMERMEGQYRPGKPFVKVKFHDFTQT TLEQSGAGRDLGSYEQLLTQAFARGGKPVRLLGIGVRLHDLRDAHEQLELFST
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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