Pseudomonas syringae pv. tomato DC3000, PSPTO_3641
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGAAGTCAGCATCGGCTCGACACCCACCGCATTGTCTGCGCAAGGTCTTGCAGGCGTGACCGAGGTGCGCGCGGGCGTGTATGTGTTCTTCGATCTG GTGATGCACAACATCGGCGTGTGCGGTGCAGACGAGCTGGCCTTGAGCGTGCTGACCACCGTTATCGGCCATCAGCAGGACAAGGGCTGGGTTATCGTCG ACGCAGGCTGGATGGCCATGAGCCGGGATCGCGGCACCCAGCGCCAGCGTCAGGATTTCGGTTACGGCCAGGTCTGCACTGAAACCGGCGAGTGGATCGA TGGCGCGCGAGTGACCGGGGCCAATCAGGAGCACGGCATTATCACCCTCGCCACAGGCGACAGCACAGACATCACCGGCCGCTTCCCGATTGGCAGCCGG CTGCGCATTCTGCCCAATCACGCGTGCGCGACCGGCGCGCAATTCCCGGACTATCACGCCTGCGACGCCGAAGGCGCAGTGCACATCTGGAGTCGTCTGC
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| DNA Sequence for Gene |
>PSPTO_3641
ATGGCTGGTGATATCGAACTGATTCGCACCCCCTCGGCCGCAGCGCCGGGCGGGCACTATTCCCAGGCGGTGCTGCACCTAGGCATTTTGCATGTTTCCG GGCAATTGCCGGTGCGCGCCGACGGCAGCCACAGCGTTGACGAGCCGTTCGAGGTGCAGGCGGCCATTGCGCTGGACAATCTGGTCGCGATACTGGGCGC AGCAGGTTGTGGCACGGATGACCTGCTCAAAGTGACGGTCTATGTAGCCGGTATCCGGCACTGGCCTGATTTCGACCGGATCTATGCGCGCTATCTGGGC GAGCATCGTCCGGCCCGCGCTGTGGTGCCGGTTCCAGAATTGCATCACGGCTACCTGATCGAGATCGAAGCCCTGGCGCGCGCCGTACGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATTATCGGGAGCACCTCATGACCCCGCAAAAAAGCGACGTTCTGATTATCGGTGGCGGCTTCATGGGCTCGTCATCGGCGTTTTTCCTGCGCCAGCAC GGGCGCTCGGTGACCCTGCTGGAACGCGACCAGATCGGCCAGTACGCCAGCGGCGTCAACTTCGGCAATGTGCGCCGTCAGGGCCGGTTTCTCGGCCAGC TTGAACTCTCCAATCGCTCCTGGGCGCTGTGGAAACGCCTGCCCGAGCTGATCGGCGAAGACCTGGAGTTCATTCCCAGCGGCCACATGCGCGTGTGTTA TCGCGAAGACGAAATCGCCGAGCTGGAGGCCTACGCCGCGGCACCCGAAGCCCGCGAGCTGGATTTGCAGGTCATCAGAGGCAAGGCGCTGCATGAGCGC TTCGCGTTTCTCGGCCCGGAGGTCAAAGGCGGCTCTTATGCGCCGCACGACGGGCACGCAAACCCGCGCCTGGCCGCACCCGCCTTCGCCCGTGCGGCGA
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| Amino Acid Sequence |
>endoribonuclease L-PSP family protein
MAGDIELIRTPSAAAPGGHYSQAVLHLGILHVSGQLPVRADGSHSVDEPFEVQAAIALDNLVAILGAAGCGTDDLLKVTVYVAGIRHWPDFDRIYARYLG EHRPARAVVPVPELHHGYLIEIEALARAVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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