Pseudomonas syringae pv. tomato DC3000, PSPTO_3464
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCACCTGGCTGCGGTCATGCCGCTGGAGTCGGCACTGGTGATGGTGATCCTGCGCTGGCCCGCCGATGTGCGTGAGCTCGACGCACTGGAGCTGAC CGAGGCCGTAACCGATGCCAGGTTGACCAAGAGCGAACGTGACATGGCCAGGCGTCTGGTCAAGGACATGAGCGCAGACTGGCAACCCGACCAGTACCAC GACACGTTTCAGGAAAAGATCATGCAACTGGTCCAAACCAAAGCCGGTGAAGGCAAGATCGAGGATGTCGAAACTGATCCGGGCGAGGAAGAGCGCAAGA GCGCCGATGTCATTGACCTCACCGATCTGCTGCGCCGCAGCCTGGCAGGCAAGAGCAGCGCCAGTAAAACACGCAAGCCTGCTGCGAAGGACAAGGTCGC AGACAAGCAAAGCCCTAAGCCGAAACGACCTGCCGTGCGCAAGAAAACCGGCAAAGCTTCTTGAGCCATAAGCCTTTTGAGGCATACGGAGAAATCGTCC
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| DNA Sequence for Gene |
>PSPTO_3464
ATGGTCAAGCCAGCCAGTGAATACACGCGCAAGCGCAACTTTGACGTCACCTCCGAGCCTTTGGAGAGCAAACGTAAAGGCAAGGCGCGGTCCGGTGCAC TGAGTTTTGTGATTCAGAAGCACGATGCGCGCAACCTGCATTACGACTTTCGGCTGGAACTGGACGGTACGCTGAAGAGCTGGGCGGTGCCCAAAGGGCC CAGCCTGGACCCGAAACAGAAGCGTCTGGCCGTGCATGTCGAAGATCATCCGCTGGACTACGCCGCTTTTGAAGGCAGCATTCCGAAGGGCCAGTACGGC GGAGGCGATGTAATCGTCTGGGACAGGGGCATCTGGCAACCCCATGGTGATCCACGCAAGACCTATGAGGACGGCAAACTCAAGTTCACCCTGATCGGCG AAAAACTCAGTGGCGAGTGGGCGCTGGTGCGCACTCGGCTCAAGGGCAGTGGCAGCAAGGAGCAGTGGCTGCTGATCAAGGAAAAGGACGACATCGCGCG ACCTGCCGCCGAATACGACATCACCGAGGCGCAACCGCAAAGCGTGATCAGCGGTGCGCACGTCGGGGCAGGGCGTTCAGCGCCAGCAAAGCCCAAAGCC AAGGCTGTTGAAGCGAAGCCTGCGCGCAAGCCCGCACCCAAAAAGGCGAAAGCCGTTTTCCCGGACACGTTTGCGCCGCAACTGGCGACACTGGTCGATG CGCCGCCTGCGGGCGACTGGCTGTACGAGATCAAGTTTGACGGCTATCGCATGCTGACGCGTATCCAGAATGACGAGGTGCGTCTGTTCACCCGTAACGG CAACGACTGGACTGACCAGTTGCCCGAGCTGACCAAGGCGCTCAAGGGCCTGAAGTTGCAAGACAGTTGGTTCGACGGCGAAGTGGTGGTGCTCGACGAG CAAGGGCTGCCGGATTTTCAGGGGTTGCAGAATGCCTTTGATGAGGGGCACAGCAAAAATATTTTCTATTACCTGTTCGACATGCCGTTTCTGAGCGGCG AAGACCTGCGCGAAGTGCCTCTTGAGCAGCGTCGCGACGCTTTGAAACAAGTGCTCGGCAGCCAGCGCAGCCGCTTGCTGCGCTATTCGGATGCGTTTCA GGCCGGGCATCAGGACATCGTGGCCAGTGCTGCGGCGATGGGCCTGGAGGGCGTAATCGGCAAGCGCGCTGGCAGCGCGTACGTTGGCAAGCGCAATGCC GACTGGATCAAGCTCAAATGCCGGTTGCGCCAGGAATTCGTGATCGTCGGTTATACCGCGCCACAAGGCAGCCGCTCGGCCTTCGGCGCGCTGTTGTTGG CGGTCAATGACGATGCTCAGGGGCTGGTGTATGCCGGACGGGTCGGCACCGGGTTTACCGAGGCGACGCTCAAACACGTGCACAAGCAACTGAAACCGCT GCACCGCGAGGAATCGCCCTTGGCGAAAAAACTGACCTCGGCGCAGGCGCGCGGCGTGCAGTGGGTCGAGCCGACGCTGGTCTGCGAAGCTGAGTTTGCG CAGTGGACTCGCGAGGGCATCGTGCGTCAGGCAGCGTTTTTCGGCCTGCGCGGTGACAAGCCAGCTGGCGATGTGGTGCGTGAAGACGCTCAGCCAGCCG AGGCTGCGTCAGTCACTCCTGAGCCCTCCAGGCAGCCCGGCAAGAAAACTGCCCGAGGCAAGGTTGATGTGGCGGGCACTGGCATCAGTCATCCGCAGCG GGTGATCGACAGCACTACAGGCACGAAGAAAATCGAGCTTGCGCAGTTTTACGAGTCTATCGCCGACTGGATTCTGCCGTACCTGAACAAGCGGCCAGTG GCATTGCTGCGCTGCCCGGAAGGCATCGACGGCGAGCAGTTTTTTCAGAAACACGCCGAGCACCTTGCCATACCGCATATCAGGCAGCTGGATCGGGCGC TGGACCCCGGCCACGCCGCGCTGATGGAGATCGACTCTGTGCAGGCGCTGGTGGGCGCGGCGCAGATGGGCGCCATCGAGTTGCACACCTGGGGCGCGAC CCGCGACAGGATCGAAACACCGGATCATTTTGTGCTGGACCTTGACCCAGACCCGGCGCTGCCCTGGCGCAGCATGATCGAGGCCACGCAAATGGTTCTC GCCGTACTGGAGGAGCTGGGGCTTGAGGCTTTTCTCAAGACCAGTGGCGGCAAAGGCATGCACATTATTGTGCCGCTGGCGCGACAGGCCGAGTGGGACA CCGTGAAAGCCTTCGCCAAGGCCATCGCCGAGTTCATCAGCCGTCAGTTGCCGGAACGCTTCACAGCCACAATGGGGCCGAAAAACCGGGTCGGCAAGAT TTTCATCGATTACCTGCGCAACAGTCGTGGCGGCAGCACAGTGACCGCCTATTCGGTACGCGCCCGGCCGGGTTTGCCGGTCTCGGTGCCGATTGCGCTG CATGAGCTGACCGGTCTGACGTCGTCGGCGCAATGGGACATCACCAACCTTGAGCAACGCTTGAGCCAGCTCAAGAGTGACCCGTGGGCCGGTTACAGCA ACCGGCGCAAAATCACGCAAAAGATGTGGAAACAGCTGGGGGCTAAACAGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGGCGGGTCTTCTATTTCACCGCCAACCGGCCAGGCAGGAAGCTGACGGGTTGGCGGTGAACGCACAGATCAGAGAATGCGGTAGAGCAAACGCTC GACCCTGACCCGGCTGACCCGCTTGAGGAACTTGCGCACTCCTTCAGGATAATTGGCCAGCGTGTCGAGCTCGTCGTACTGGTTGACGCGTTGTGTGTTG CGCATCAATTGGGCGATTTCCGCTTCACGCGGGTCGGTCCACTGGCCTTGCGGATCATCGATCAGCAAGCCGTTTTCCAGGTCGAGGTTGAACGCCCGAG GGTTCAGGTTGTTGCCGGTCAGCAAGGTATAACGCTGATCGACCCAGATCCCCTTGAGGTGGAAGGTGTTGTCGCCGTGCTTCCACAAGTGCACGTTCAG ACGCTGCTGGGCGATGGCCTTCTGGTGCTTGTGGGCAAAGCGTCGCAGGCTGATTTCGTACAGATAGGGCAGGGCCGAAATCACTTTGAACGGCTCGTCC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MVKPASEYTRKRNFDVTSEPLESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYG GGDVIVWDRGIWQPHGDPRKTYEDGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISGAHVGAGRSAPAKPKA KAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGDWLYEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDE QGLPDFQGLQNAFDEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVLGSQRSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNA DWIKLKCRLRQEFVIVGYTAPQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLTSAQARGVQWVEPTLVCEAEFA QWTREGIVRQAAFFGLRGDKPAGDVVREDAQPAEAASVTPEPSRQPGKKTARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILPYLNKRPV ALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVL AVLEELGLEAFLKTSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIAL HELTGLTSSAQWDITNLEQRLSQLKSDPWAGYSNRRKITQKMWKQLGAKQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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