Pseudomonas syringae pv. tomato DC3000, PSPTO_3462
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAACCAGTCGACCAGCACCACCACGTCCAGCTCGGGCCGTGCAGCCTTGGCGGCGTACAGCGCGTCGAGGATTTCCTGGCCGGCTTCATCCTGTTGCAG GTACAACGCGATGATATAGATGCGCCGCGTGGCCGAAGCGATCTTCTCCAGCAGGCAGCGCCGGTAGTCGGCGGCAGAAGGAACAATGGAGATTGCATCA CTCGGCAAGGCAAAACCGCGAAGCGCTGCCAGGGTCGAGCGTCGGAAAGTGGACTGCATAGGCCTCTCGATGGGAAAACCAACAGCGTACGAGCTTACAC GAGAGTCGCGCTCAGGTGGCTGTCCACGACCTGTTTCAAAGCATTGCTGTGTGACGCGAAGCGCACGCTGTGTAACTTTTTGCATGCAAATAAATGATAA GCATTCCCAGTAACATATGGTAGCATTTCGCATCCACTGAGTCGGTCATCTCCAGGAAGGTTTCTTCCGATCTCGCTCATTCCGTCAGCAGGACCTCTTC
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| DNA Sequence for Gene |
>PSPTO_3462
ATGCACACCTCATCGATCCCGATGCGCCTTACGTTGCTCGCTTTTTGCTGTTCCATGGGTTCTCCGGCCTGGGCCGCTACGGCGGCTGCCAGTCAGCAGG ACGGGCCGATGGTCTTGGGCGAGACTGACATCAGCGCCGACAAGGCCGACCCGCATGCGCTGTCGCCCGTGTACGCAGGCGGGCAGGTGGCTCGCGGCGG GCAGCTTGGCGTGCTGGGCAATGCCGACATCATGGATGTGCCGTTCACCATGACCAGCTACACCGAACAATTGATCGAGGACCAACAGGCCGAAGACGTC GGCGATGTACTGCTCAATGATGCGTCGGTGCGCCAGTCAAGCGGCTATGCCAACGCCTCGAAGATCTTCGTCATTCGTGGCCTCAAGCTGACCACCGACG ATATTTCCTATAACGGCCTCTACGGTGTGCTGCCGCGCCAGATCATCTCGACCGATGCGCTGGAGCGGGTTGAAGTGTTCAAAGGCCCCAATGCCTTCAT CAACGGCGTCACCCCGACCGGCTCCGGGATTGGCGGCGGCGTCAACCTGCAGCCCAAGCGTGCACAGGACACACCGACGCGGCGTTTTACCACCGACATC AGCAGCGATGGCCGGATCGGCGAGCATCTGGACCTCGGCCAGCGCTTTGGCGAGGGCAATCGTTTCGGTGCGCGCCTGAATCTGTCTCAGCGCGAAGGCG AAACCGGCGTTGAGGACGAAGAGCATCGCAGCAAGCTGTTTGCCCTGGGGCTTGATTATCGGGGTGACAACTTCCGACTTTCCGGCGATTTTGCTTACCA GAAGCAGCGCATCAACCAGAGCCGCAACACGGTATTCGTCGGCAGCGGCCTGACCCGCGTGCCGCATGCGCCGGATGCCGACACCAATTACGCGCCGAAC TGGACCTGGACTGAAACCGAAGACACCTTCGGCATGAGCCGCGCCGAGTACGACCTCAATGACGACTGGACGCTGTACGCCGCAGCCGGTGCCAAGCACA CCCGTGAAAACGGAATCTACGGCTCGCCGACCATCAACGACGCCGCAGGCAACATCACCGCGTCACCGTCTTCGATCCCGCACGACGAAGACAACAAGAC GGCCATGGCCGGCATCAACGGCAAGCTGCAGACCGGCGCGGTCAGTCATAAGGTCAACGTCGGCCTGTCCGGCATCTGGACCGAGCAGCGCAGTGCCTTT CTGTTTGGCGGCCCTGCGAGCAGCAACCTATACGACCCCGTTGAAACAACGCGTCCTGCGCTGGACAGCTTCTCGGGCGGTGACCTCAGTGATCCGGGCA TTATCGGCAAGAGCCGCATGCGCAGCGTAGCGTTCTCCGATACCTTGGGTTTTTTCGATGACCGCCTGTTGTTGACGGCAGGCCTGCGTCGCCAGCAACT GCGTGTCGAGGGTTATGACTACGGCAGTGGCCCGCGCAACGCGCTGTATGACGAGGCGATTACCACGCCGGTCTATGGGTTGGTGTTCAAGCCCTGGCGC TATGTGTCGTTCTATGCAAACCGCATTGAAGGTCTGGCGCAGGGGCCGACGGCGCCGAGCACAGTGACGATCAACCCCGGCGAGGTGTTCGCACCGGCGC GCTCCAAACAGGTAGAAGCCGGCGTGAAGCTGGACATGGGAACGTTCGGCGCAAGCCTGGGTGCGTACCGCATCGAACAGCCGACTGACGGCTATCAGAT TCAGGATGGAAGCGGAACGCGCTACGTCCGCGAGGGCGAACAGCGCAACCGTGGCGTGGAAATGAACGTGTTCGGCGAGCCTGTCAGCGGCCTGCGTCTG CTGGCCGGTCTGACCCTGATGGACACCGAGGTGAGCGGTACGTCCGGTGGCAGCAACGATGGCAACAGGGCCATTGGTGTGCCGACCTTCCAGTTCAATG CCGGTGCCGACTGGGATGTGCCAGGCATCGCAGGCGCTGCCATCAATGCGCGCATGCTGCGTACCGGTGGACAGTATATCGATGCCGCAAACACCCTGAG CATTCCCACCTGGAACCGTTTCGATCTGGGCGCACGCTACACCTTCAACGTGGCGCAAAAGGACGTCACACTGCGTGCCAATGTCGAAAACCTGATGAAC AAGGATTATTGGGAATCGGCCTACGGAGGCTATCTGACTCAGGGCGAGCCACGCACCTTGAAGCTGTCCGGTACCCTCGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAATCGGCGCTGGCTGCATCGCAGGATGCAGCCAGCCGCTCGATCAGTAGCCGTTACGCTTGAGAATGGCATCGATGCTTTCTTTCGCGGGCCGATCAT AGAACTTCAACAGTTCAGCGGTGCGGTTAGTGAAGAAGCCATCGACACCGTCATTGCGGATGCGCTTGAAGTCCGCCGCGTCGTCCACGGTATACGGGTG GATGACCATGCCTTTTTCATGCGTCAGGTTGTTCATCCAGGGTTTGACCAGGTCCATGTAGCTCTGGTCGCCGCCCTGGGCCAATTGCGACGAAGGGCCG GTGCCGATCGCGCCATGGGCTTTGGCCCAGTCAATCCACTTCTGGAATTCCTCCGGCGACTTGACCTCCTGCGCTGCATAATAGCTGGCCTTGTCCTTGG CCCCCGAGTCCTTGAACGCGACGCTGGATTTAGGCTCTATCGACCCTTCGCCAATCCACAGCAACAGCACCTTGGGCACCTGCGGCATTTCTTTTTGCAG
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| Amino Acid Sequence |
>TonB-dependent siderophore receptor
MHTSSIPMRLTLLAFCCSMGSPAWAATAAASQQDGPMVLGETDISADKADPHALSPVYAGGQVARGGQLGVLGNADIMDVPFTMTSYTEQLIEDQQAEDV GDVLLNDASVRQSSGYANASKIFVIRGLKLTTDDISYNGLYGVLPRQIISTDALERVEVFKGPNAFINGVTPTGSGIGGGVNLQPKRAQDTPTRRFTTDI SSDGRIGEHLDLGQRFGEGNRFGARLNLSQREGETGVEDEEHRSKLFALGLDYRGDNFRLSGDFAYQKQRINQSRNTVFVGSGLTRVPHAPDADTNYAPN WTWTETEDTFGMSRAEYDLNDDWTLYAAAGAKHTRENGIYGSPTINDAAGNITASPSSIPHDEDNKTAMAGINGKLQTGAVSHKVNVGLSGIWTEQRSAF LFGGPASSNLYDPVETTRPALDSFSGGDLSDPGIIGKSRMRSVAFSDTLGFFDDRLLLTAGLRRQQLRVEGYDYGSGPRNALYDEAITTPVYGLVFKPWR YVSFYANRIEGLAQGPTAPSTVTINPGEVFAPARSKQVEAGVKLDMGTFGASLGAYRIEQPTDGYQIQDGSGTRYVREGEQRNRGVEMNVFGEPVSGLRL LAGLTLMDTEVSGTSGGSNDGNRAIGVPTFQFNAGADWDVPGIAGAAINARMLRTGGQYIDAANTLSIPTWNRFDLGARYTFNVAQKDVTLRANVENLMN KDYWESAYGGYLTQGEPRTLKLSGTLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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