Pseudomonas syringae pv. tomato DC3000, PSPTO_3328 (tliF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGAGCAGCAACTGGCGTCGGCAGGTTTCAGTCTGCAGCACAGCGCCATTCTTGCGCCTGCCGATGGCATCGCTGTGAACATGGGCGTGCACACCGAA GGCGCTGTGGTGCGGGCCGGTGAAACCTTGCTGGAGATCGTTCCGCAAGGCACCCGACTGGAAGTCGAAGGGCGTTTGCCGGTGCAGTTGATCGACAAGG TCGCCAGCCATTTGCCGGTCGACATCCTCTTTACCGCGTTCAATCAGAGCCGCACACCTCGGGTGGCCGGCGAAGTGAGCCTGATTTCCGCCGACCAGAT GCAGGATGAAAAAACCGGTCAGCCGTATTACGTACTGCGTACCTCGGTGGGTGATGCCGCACTGGAAAAACTCAACGGTCTGGTGATCAAGCCGGGCATG CCCGCTGAAATGTTCGTGCGCACGGGTGAACGCTCGCTGCTCAACTACCTGTTCAAACCTTTGCTGGACCGTGCCGGCTCCGCGTTGACGGAGGAATAGG
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| DNA Sequence for Gene |
>PSPTO_3328
|tliF
ATGATGCGTTATCCTCTGAAAGCCGCTTTGCTGACGGCCATCCTGCTGGGTACTGCGCCGTTGAGTCATGCGATGGGACCGTTTCAGGTCTATGAGCTGG CGCTACGCAATGACCCGACCTACCTCGGCGCACTCAAGGAACGCGATGCGGGCCTTGAGAACCGGATCATTGGTCGCGCCGGCCTGTTGCCTCGCGTGTC GTACAACTACAACAAAGGGCGCAACGATTCAAAAGCCACCCTTAAAGGTGGCCGCGAAGACACCACGGATCATCGCCACTACAACAGCTTTGGTTCAAGC CTGACGATCCAGCAGCCGTTGATTGATTACGAGGCCTACGCCAATTACCGCAAGGGCCTGGCTCAGGCACTGTTTGCCGACGAGACCTTTCGCAGCAAGA GTCAGGAATTGCTGGTGCGGGTGCTGACCCTTTACACCCAGGCACTGTTTGCTCAGGACCAGATCAGCATCGCGCGCGCCAAACAGCAGGCGTTCGAGCG CCAGTTTGCGCAGAACCGGCAGATGTTTCAGCAAGGCGAGGGCACCCGTACCGACATTCTGGAAGCTGAATCGCGCAACGAGCTGGCGATTGCCGAGCAG ATCGAAGCCAGCGACGAACAGGACGCTGCCTTGCGTGAACTGGCAGCGTTGCTGGGCGAGCCGGGTATCGATGTTTCGCAACTGGACCCTTTGAAGGACA GTTTTCAGGCGTTGGTACTCGCACCTTCAAGTTTCACCGAGTGGCATGCGCTGGCCGCGGCCAATAGCCCGATACTTGCGTCGCAGCGTCAGGCAGTGGA AGTGGCGCGCTATGACGTGGAGCGCAATCGCGCCGGTCATCTGCCGACGGTGAATGCCTTCGCGAGCATTCGTCAGAACGAGTCGGACAGCGGCAACACC TACAATCAGCGTTACGACACTAACACCGTGGGCATCGAGGTCAGTCTGCCGTTGTACGCCGGTGGCGGCACCAGTGCTTCGGTGCGTCAGGCCAACAGCA AGCGTGAACAGGCTGAATACGAGCTGGAAGGCAAGACCCGTGAAACCCTGATCGAGCTGCGTCGCCAGTTCAACGCCTGCGCGTCCGGGGTGAGCAAGCT GCGCGCTTATCAGAAAGCGTTGGTGTCGGCGCAGGCGCTGGTCGAATCGACACGCCAGAGCATTCTGGGTGGCGAGCGCATCAGCCTGGATGCGCTCAAC GCCGAGCAGCAGCTCTACAGCACCCGGCGCGATCTGGCGAAAGCCCGTTACGATTATTTGATGGCGTGGATCAAACTGCATTACTACGCCGGTACGTTGC GCGACACCGATCTGGCGCGCATCGACGAGGCCTTCGTGCTGGCGCGCGATGGCCGTGATCGGCAGCGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAAACAGCGGCGCTGAACCGTGCGAGCGAGAAGGCTGAAAGATCTACATCGCTCTTGCCGTGAATACAGCGTTGCGCGAGGGCCAGCCCCAGCCCGGCT GAATGCTTGAAGCCGTGACCGGAGCACGCCGATACAACGGTCACGTTTTTCAGGTACGGGTGTTCATCGATGATGAAGTGGTAGTCGGGCGTGACGGTGT AGGCGCACACCGAGGATTTGACGACGTGCGGGCTCAGGCCTGCAATTTTGCCCTTTATCTGGGTGTCGAACCTGTCCTGCTCCTCGCTCGCGGTAACGGT GCGGTCCAGCGTGTTCGGCGCTGAGTCCTCAATGTATTGCTCGGTGGCGACCTTCATGCTGTTTTCGCCGGGCAGAGGCGGGAAGCCGTAACTCACGTCA GCATCACCGGGCCCGTGAATCATGATGAAGCTGGGCGAGCGCGGAGCAAATACCGCGTCTTGCTGTCGTTCGAACCAGAACAGCTTTTGCCGGCACACCC
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| Amino Acid Sequence |
>ABC transporter permease
MMRYPLKAALLTAILLGTAPLSHAMGPFQVYELALRNDPTYLGALKERDAGLENRIIGRAGLLPRVSYNYNKGRNDSKATLKGGREDTTDHRHYNSFGSS LTIQQPLIDYEAYANYRKGLAQALFADETFRSKSQELLVRVLTLYTQALFAQDQISIARAKQQAFERQFAQNRQMFQQGEGTRTDILEAESRNELAIAEQ IEASDEQDAALRELAALLGEPGIDVSQLDPLKDSFQALVLAPSSFTEWHALAAANSPILASQRQAVEVARYDVERNRAGHLPTVNAFASIRQNESDSGNT YNQRYDTNTVGIEVSLPLYAGGGTSASVRQANSKREQAEYELEGKTRETLIELRRQFNACASGVSKLRAYQKALVSAQALVESTRQSILGGERISLDALN AEQQLYSTRRDLAKARYDYLMAWIKLHYYAGTLRDTDLARIDEAFVLARDGRDRQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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