Pseudomonas syringae pv. tomato DC3000, PSPTO_3100 (saxF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGATGAACTTCGTCGACAATCAGGTCAACCCGAGGACCGGCACCATTCGTGGTCGAGCGGTGTTCGACAACACTGACGGCAGCTTCACACCGGGGCT GTATGCACGGCTGAAACTGGTTGGCAGCGGCACCTACTCGGCAGTGCTGATCAACGACGAAGCGGTCGGCACCGATCTGGGCAAGAAGTTTGTGCTGGTG ATGGACAAGGACAACAAGCCTGCTTACAGGGCTGTTGAACTGGGCCCGAAAATCGAAGGCCTGCGTATTGTGCGCAACGGACTGGCAAAGGACGACACCA TCGTCGTCAAAGGCTTGCAGCGTGTGCGCCCCGGCCAGCCTGTAGACCCTGAAATCACCCCGATGGCCAGCGCCGACACCCTCGCCGCACTGCAAAAACA ACGCCAGGCCCTCGACGCCAGCACCCAGCCACAGGTGACGTCCAAAGCCGCCGTCAAAATCGCCAGCGCCTCCGCGCCGCGCGACTAAGGGACTCGTCCG
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| DNA Sequence for Gene |
>PSPTO_3100
|saxF
ATGAACTTCTCCAAATTCTTTATTTCACGGCCGATCTTCGCCGCAGTGCTGTCGCTGCTGATCCTGATCGCCGGTGCAATCTCGCTGTTCCAGTTGCCGA TCAGTGAATACCCGGAAGTCGTGCCGCCGACCGTAGTGGTACGCGCCAGCTTCCCCGGCGCCAACCCCAAGGTGATCGGCGAAACCGTCGCTTCGCCGCT GGAACAGGCCATCACCGGTGTCGAGGGCATGCTCTACATGTCGTCCCAGGCCACCGCCGACGGCAAACTGACCCTGACCATCACCTTTGCGCTGGGCACC GAGCTGGACAACGCTCAAGTGCAGGTGCAGAACCGCGTGACACGGACCGAGCCCAAGCTGCCCGAGGAAGTCACGCGTATCGGCATTACCGTGGACAAGG CCTCTCCCGACCTGACCATGGTTGTTCACTTGACCTCGCCGGACCAGCGCTACGACATGCTGTACCTGTCCAACTACGCCGTGCTCAACATCAAGGATGA GCTGGCGCGACTGGGCGGTGTCGGTGATGTGCAGTTGTTCGGCATGGGCGACTACTCGCTGCGTGTCTGGCTCGATCCGAACAAGACCGCCTCACGCAAC CTGACCGCCACCGACGTGGTCAACGCAATTCGCGAACAAAACCGTCAGGTCGCCGCCGGCCAGTTGGGCTCGCCGCCTTCGCCGAATGCCACCAGTTTTC AGATGTCGATCAACACCCAGGGCCGTCTGGTCAGTGAGGAAGAGTTTGAAAACGTCGTGGTCCGCGCCGGGCCAGACGGAGAAATTACCCGCCTGAAGGA CGTCGCACGTATCGAGCTGGGTTCCAGTCAGTACGCCCTGCGCTCGCTGCTCAATAACCAGCCTGCCGTGGCAATGCCGATCTTTCAGCGCCCAGGCTCC AACGCCATCGACATTTCCAACGATGTGCGGGCACGGATGGCCGAGCTGAAAAAAGGCTTCCCCGAAGGCATGGACTACAGCATCGTCTATGACCCGACCA TCTTTGTGCGCGGCTCCATCGAGGCGGTGATCCATACACTGTTCGAAGCACTGATTCTGGTGGTGCTGGTGGTGGTGCTGTTCCTGCAGACCTGGCGCGC CTCGATCATCCCGCTGGTGGCTGTACCGGTGTCACTGATCGGCACCTTCGCTGTGATGCACATGTTCGGCTTCTCGCTGAACGCGCTGTCTTTGTTCGGC CTGGTACTGGCCATCGGCATCGTGGTAGACGACGCGATTGTGGTGGTCGAGAACGTCGAACGTAACATCGAGCTGGGGCTTGAACCGGTCGAGGCGACGC ACAAGGCCATGGCTGAAGTGACGGGGCCGATCATTGCCACGGCGCTGGTGTTGTGCGCGGTGTTTGTACCGGCAGCGTTTATTTCTGGCCTTACCGGGCA GTTTTATAAACAGTTCGCACTGACCATTGCCATCTCGACGGTCATCTCGGCGTTCAACTCGCTGACCCTGTCGCCGGCGCTGGCCGCGGTATTGCTTAAA GCTCACGATGCACCCAAGGATCGCTTCTCGCGTTTCCTCGATAAAATACTCGGAGGCTGGCTGTTCCGCCCGTTCAACCGCTTCTTTGAAAAAGCCAGCC ACGGCTATGTGGGCACCGTCGCACGGGTCATTCGCAGCAGCGGCATCGCGTTGCTGGTCTATGCGGGGCTGATGGTTCTGACCTGGCTGGGCTTCGCCAG CACGCCAACCGGTTTTGTGCCAAGCCAGGACAAGCAATATCTGGTGGCATTTGCCCAGTTGCCGGACGCCGCGAGCCTGGACCGCACCGAGGACGTGATC AAGCGCATGTCGGAGCTGGCACTCAAGCAGCCCGGTGTGGAAAACGCGATTGCCTTCCCGGGTCTGTCGATCAACGGCTTCACCAACAGCCCGAACAACG GCGTGGTATTCGTCGCCCTCAAGCCTTTCGATGAACGCAAGGACCCAAGCCTGTCGGCCAACGCCATCGCCGGTGCCCTGAACGGCCAGTTTGCGTCGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCGCCGGTACAAGGGCTGGGCACCATTGGCGGCTTCCGCTTGCAGATCGAAGACCGTGGCAACCTGGGT TACGACGAGCTGTACAAGGAAACCCAGAACATCATCACCAAAAGCCGCAGCGTGCCGGAACTGGCCGGGTTGTTCACCAGCTACACAGTGAACGTGCCGC AGGTCGATGCCGCGATTGACCGAGAGAAGGCCAAGACGCATGGCGTGGCCGTCAGCGATATCTTCGACACCCTGCAGGTGTACCTGGGCTCGCTGTATGC CAACGACTTCAACCGTTTCGGCCGCACTTATCAGGTCAACGTCCAGGCTGAGCAGCAGTTCCGTCAGGATGCCGATCAGATCGGTCAGCTCAAGGTGCGC AACAATCTGGGAGAAATGATACCGCTGGCAACCTTCGTCAAGGTCAGTGACACCGCAGGTCCCGACCGCGTGATGCACTACAACGGTTTCATTACCGCCG AGATCAACGGCGCAGCCGCACCGGGCTTCAGCTCTGGCCAGGCGCAGACCGCGGTGGAAAAGCTGCTGCGTGAAGAACTGCCCAACGGCATGGTCTACGA ATGGACCGACCTGACCTATCAGCAGATTCTCTCGGGCAACACCGCGCTGTTCGTCTTCCCGCTCTGCGTGTTGCTGGCGTTCCTGGTGCTGGCCGCTCAG TACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTACCGATGACCCTGCTCTCGGCCATTGCCGGGGTGATCATTGCCGGTAGCGACAACAACA TCTTCACCCAGATCGGCCTGATCGTACTGGTGGGGCTTGCGTGCAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGACAAACAGGCCGAGGGCATGAG CCCGCTGGATGCAGTGCTGGAAGCCTGCCGCCTGCGTCTGCGTCCGATCCTGATGACCTCGTTTGCCTTCATCATGGGTGTGGTGCCACTGGTACTTTCC AGCGGTGCCGGTGCCGAGATGCGTCACGCGATGGGGGTCGCGGTGTTCTCCGGGATGCTCGGCGTCACCTTCTTCGGCTTGCTGCTGACGCCGGTGTTCT ACGTGCTGATCCGTAACTACGTTGGACGTCAAGAGGCCCGCAAGGCCGCCAAGGCGCAAAAACTGCAAAACCTGCCTGCGGAGATGCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAGCGCGTTTAAAGTCTTTGTCCCGAGCCTGCTGGTTCTGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGGCACCGGTCACCGCGCCTGCGAC CCTGGCCTCGGCGGCCAAGGGCAACTATGACCGTAGCAAGGTCAACACCCTGTGGTGGCAGCAGTTCGAGGACCCGACCCTTAACAAGCTGGTGGCCCAG TCACTGGACGGCAACCGTGATCTGCGCGTCGCATTTGCCCGCCTCAAGGCTGCACGGGCGATTCGCGATGACGTCGCCAACGACGTCATGCCGGTGGTGA CCAGCCGGGCCAGCAGTGACATCGGCAAAGGCCAGCAGCCCGGTATCACCGAGCGCCGCGTCAACAGCGAGCGTTACGATCTGGGCCTGGACATGGCCTG GGAGCTGGACCTGTTCGGACGCATTCAGCGACAACTGGAAGCCAGCGATGCCGACCAGGAGGCTGCCGAAGCCAATCTGTATCAGCTTCAGGTCACGCTG
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| Amino Acid Sequence |
>aliphatic isothiocyanate resistance protein SaxF; AcrB/AcrD/AcrF family
MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRASFPGANPKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGT ELDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQMSINTQGRLVSEEEFENVVVRAGPDGEITRLKDVARIELGSSQYALRSLLNNQPAVAMPIFQRPGS NAIDISNDVRARMAELKKGFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVVLFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPVEATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK AHDAPKDRFSRFLDKILGGWLFRPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQDKQYLVAFAQLPDAASLDRTEDVI KRMSELALKQPGVENAIAFPGLSINGFTNSPNNGVVFVALKPFDERKDPSLSANAIAGALNGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETQNIITKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRQDADQIGQLKVR NNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGFSSGQAQTAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIAGVIIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVGRQEARKAAKAQKLQNLPAEMH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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