Strain | Pseudomonas aeruginosa strain AZPAE14935 AZPAE14935_contig_8, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGGGCAGCGCCGGACAGGCGCCCGCGGCCGGCCTTGACCAGATCCAACTGGCCCGGTCCGTCCTTGTCCACCTCGTTGCCGGTGGTGCCGAAGTCCAGCG GCACAGTGATCCGACTGTCGAAGGAGAGGATGCGCTCGTGCAACTCCTCTGCGTGTTGCATGACCTTGCGCGGGTAGCCGGCGCTGCCCAGCCACTGGGT CCAGGCCAGCCAGCCGCCGGCGGCCAGCAGGACGATGAGCAGTGGCAGGCCGAGGTAAAGCGCCGTTCTTTTGCGAGTTCTAGTCATTGCCGTCCCAGTC AGGTTCGAAATCGGTGGACGCCGGTCGTTCCGCATTGCAGAGCGGGGCACCTGTCAGGGTGGGACGAGGGCAGGGACGGAAAATTTAGCGGGCCGACGAA TTCGCCGGGTGCCGCCAGCGACGCCGGCTCCGGTAAATTTGCCGATTGACGGAACGTTCTAGCTGGATAAAGCGAGCTTCATGGCTGAACAGGTAGGACG
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DNA Sequence for Gene |
>NS51_RS14365
ATGACGGTTTCTCGACGCGGATTCATGGCGGGTTTGGCGCTCACCGGAGCGGCTGCCCTGCCGGTGGCTTACTACACACATCGTCATCTGGCCCGCCTGC GCGAAGACGAGGAGCACCCGGCCACGCCCGGCGAAGCGACGCTGGACCTGGCCGCCACCGAGGCCATGCGCCTGGGCGACCGCCTGCGCGGTATCTGGGA CCTGCGCCTGCTCGGCGCCGACGCCGGCCTGCCGGGGTTACCGCTGGAGGGGTTGGAGCTGGTGCTCGACGTGGCGCCCAGGGGGCTGGGCCTGATCGGA TACCTGGATACTCCGGAGCGCCTGAGAGGGCCGCAGGAACCGCGCTTCCGCCTGCTTGGCGACCTGGTCGGTGCGCGCTCCGCGCGCATCCGCTGGCGCC TGGTGGACGGCAACACCGCCTCGATGACCCCGAGCTACGATTGCTCGGCGGTCTTCGACGAGGTCTGGGACAATCTGGCCAATGCCGGCGACGGCACCCT CAGCGGTCGCATCGAGCGCCTCGTGCGCTCGCCACTGCAAGCGCAGGAGGATTTCCGCTTCGTGGCGGTCAAGCGCCCGTTTCCGCTGGCTCGCGAGCGC ATCGGCCTCAACGAACGCTTGCTCGCCTGGCTGATCTCGCCGCAGCATCGCCTCTTCCACCAGCTCTGGCATGCCTCGCGGGACAAGTGGCATCGACTTT CCGAGAAGCAGCGCAACGCCCTGCGCGGCGTCGGCTGGCAGCCCGGCCCACTGGACCGCGAGCGTGACGCCCGTGGTCGTCACAAGGACCGCAATGCTTC CGGTATCGACTTCTTCTTCATGCACCGGCACATGCTGCATACCGCGCGCTCGATGCAGGACCTGCCGTCCTGGCGGCGCCTGCCGCTGCCGGGCGTACCG CTGGCCCACGACCGGGTCGGCTTCCTGCGCTACTTCGACAACCCTGACGGCTGTTCCGTCCCGCCGGCCTGGGTCGCGGTGGACGACGACGAATACACCG AGTGGCTGCGTGGGCTGAAAAGCGCCGAGGGCTATCACGCCAATTTCCTGGTCTGGGAGTCGCAATACCAGGACCCGGAATACCTGGCGAAACTGACGCT CGGTCAGTTCGGCTCGGAGATGGAGCTGGGCATGCACGACTGGCTGCATATGCGCTGGGCTTCGGTGACTCGCGATCCTTCCAACGGCGCGCCGGTGATG AGCGACCGGGTACCATCGGATTTTTCCCCGCGCTGGTTCCGCCCGGAGAACGACTTCCTCGGCGACCCGTTTTCCTCCCATGTGAATCCGGTGTTCTGGT CGTTCCACGGCTGGATCGACGACCGCATCGAGGACTGGTATCGCGCCCACGAGCGTTTCCATCCTGGCGAAGTGCAGCGCCGCGAAGTGGAGGGCATCCA ATGGTTCGCGCCTGGTCGATGGGTCGAGGTCGGCGATCCCTGGCTGGGCCCGGCGACCCATGGATGCGGGCTTTCGGATGTCCAGGCGAGCAGCAACTCG GTGGAGCTGGACGTGGAAACCATGAAGCTGGCTTTGCGCATCATCTTCAGCGAAGAAGACCAGTTGAGCGGCTGGCTCAAGCGTGCGCCGCGGCGGCCCT GGTACGCGCGCAACCTGAAGCTGGCGCGCGACCAGCTCAGGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACGGCGAAAGAGCGAGTAAGGATGGAGGAGGCCCGCGCAACGCGGGCCTCAGTCTTTCCGCGCGAGACCCTGGCGGTCGCTCTGCCAGCCGCCGCCGAGG GCCTTGTACAGGCCGACCGAGGCCTGCAGGCGGGCCAGTCGCAGTTGCACGGCGGCATCCTGCGCCGCGTACAGCGTGCGTTGCGTTTCGAGGACCGTCA GCAGGGTTTCCGCGCCGGCCTGGTAGCGGCTGTCGGAGAGATCGAAGGCGCGCTGCGCCTGCTCCAGCTCCTGCTGCTGCCAGTGCAGCTGGCGGTCGAG GCCGTCGATGCTGTTCAGCGAGCGTTCGGTGTCGGCAAAGGCGGTGAGGATCGCCTTGCGGTAGGTTTCCAGCAGTTCTTCCTGGCGCGCCAGGCTGCGG TCGCGCTCGGCGCGCAGGCGGCCGTGGTTGAAGATCGGGGCGAGCAGGTTGGCGCCCAGGTTGTAATAGGGGTTGCGGAAAGTGTCGGCGGCGCGGTTGG
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Amino Acid Sequence |
>Pyoverdine biosynthesis related protein PvdP
MTVSRRGFMAGLALTGAAALPVAYYTHRHLARLREDEEHPATPGEATLDLAATEAMRLGDRLRGIWDLRLLGADAGLPGLPLEGLELVLDVAPRGLGLIG YLDTPERLRGPQEPRFRLLGDLVGARSARIRWRLVDGNTASMTPSYDCSAVFDEVWDNLANAGDGTLSGRIERLVRSPLQAQEDFRFVAVKRPFPLARER IGLNERLLAWLISPQHRLFHQLWHASRDKWHRLSEKQRNALRGVGWQPGPLDRERDARGRHKDRNASGIDFFFMHRHMLHTARSMQDLPSWRRLPLPGVP LAHDRVGFLRYFDNPDGCSVPPAWVAVDDDEYTEWLRGLKSAEGYHANFLVWESQYQDPEYLAKLTLGQFGSEMELGMHDWLHMRWASVTRDPSNGAPVM SDRVPSDFSPRWFRPENDFLGDPFSSHVNPVFWSFHGWIDDRIEDWYRAHERFHPGEVQRREVEGIQWFAPGRWVEVGDPWLGPATHGCGLSDVQASSNS VELDVETMKLALRIIFSEEDQLSGWLKRAPRRPWYARNLKLARDQLRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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