Strain | Pseudomonas aeruginosa strain AZPAE14935 AZPAE14935_contig_4, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TTCGCTCGCGGACATCGTCGCAATCACCGAGGGCAAGGCGGGAACACGGGTCAGCACGCGCAAGGCGGGCATCGAGTACCGCTGATACACCACCCCCAGG GCCGCTTCGCGGCCCTTCTTCATTCTCCTCTGCCGGCATCGGGCGAAAGGTGGATAGCGCCACGCCTCTGCGCGCGGACTTTCAAGCAAGTCCCGCAACA CTCGCCTACGCCCCACCTCTGCCAACAGCCCGCCCATGGGCGTCAATCCCCCCACGGCAGACCGCCAGCACTTGTGGAAAGCCCACGCAACGCGGTATTC AGTAGGAAAATACGTGACTCGATAGTCATGATTCACGTCAGCATAGTCACCCTGATCATTTCAACGGCCACTGGCTCGTGCCCGGGTCCGTGAAGCTCGC CTCGCCGACGGGAAAGGCCGCCATCGCCGCCACGCGCTTCCCGCTCCGGACCAGGCAGCAGCCCGGCACGCGAACGACTATTCGAAGGAGTTTCTGAGTG
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DNA Sequence for Gene |
>NS51_RS08270
ATGTCTCGACTACCGGTCATTGTTGGTTTCGGTGGCTACAACGCAGCAGGCCGTAGTTCCTTCCACCACGGCTTCCGCCGCATGGTCATCGAATCGATGG ACCCGCAGGCGCGCCAGGAAACCCTAGCCGGCCTGGCGGTCATGATGAAACTGGTCAAGGCCGAAGGCGGCCGCTACCTGGCCGAAGACGGCACGCCGCT GTCCCCGGAGGACATCGAGCGGCGCTACGCCGAACGCATCTTCGCCTCTACCCTGGTGCGACGCATCGAACCGCAGTACCTCGACCCGGATGCAGTCCAC TGGCACAAGGTCCTCGAGCTGTCCCCTGCCGAAGGCCAGGCGCTGACCTTCAAGGCCTCGCCCAAGCAACTGCCCGAGCCGCTGCCGGCCAACTGGTCGA TCGCTCCCGCGGAGGACGGCGAGGTGCTGGTGAGCATCCACGAGCGCTGCGAGTTCAAGGTGGACAGCTACCGTGCGCTGACGGTGAAGTCCGCTGGCCA GTTGCCCACCGGTTTCGAACCGGGCGAGCTGTACAACTCGCGCTTCCACCCGCGCGGCCTGCAGATGTCGGTGGTCGCCGCGACCGACGCGATCCGCTCC ACCGGCATCGACTGGAAGACCATCGTCGACAACGTCCAGCCCGACGAGATCGCGGTGTTCTCCGGCAGCATCATGAGCCAGCTCGACGACAACGGTTTCG GCGGCCTGATGCAATCCCGCCTGAAGGGCCACCGGGTCTCGGCCAAGCAACTGCCGCTGGGCTTCAACAGCATGCCCACCGATTTCATCAATGCCTACGT GCTCGGCAGCGTCGGCATGACCGGCAGCATCACAGGCGCCTGCGCCACCTTCCTCTACAACCTGCAGAAGGCTATCGACGTCATCACCAGCGGCCAGGCC CGGGTGGTCATCGTCGGCAACAGCGAGGCGCCGATCCTGCCGGAGTGCATTGAGGGCTACAGCGCCATGGGCGCACTGGCCACCGAAGAAGGCCTGCGCC TGATCGAAGGCCGCGACGACGTGGACTTCCGCCGCGCCAGCCGGCCGTTCGGCGAGAACTGCGGCTTCACCCTGGCCGAGTCCAGCCAATACGTAGTGCT GATGGACGACGAACTGGCCCTGCGCCTGGGCGCGGATATCCACGGCGCGGTAACCGACGTGTTCATCAACGCCGACGGTTTCAAGAAGTCCATCTCCGCC CCCGGCCCGGGCAACTACCTGACGGTAGCCAAGGCGGTGGCCAGCGCGGTGCAGATCGTCGGCCTGGACACCGTGCGCCACGCCAGCTTCGTCCACGCCC ACGGCTCCAGCACGCCGGCCAACCGGGTCACCGAATCGGAAATCCTCGACCGCGTGGCCAGCGCCTTCGGCATCGACGGCTGGCCGGTCACCGCGGTGAA GGCCTACGTCGGCCACTCCCTGGCCACCGCCAGCGCCGATCAACTGATTTCCGCCCTGGGCACCTTCAAGTACGGCATCCTCCCTGGGATCAAGACCATC GACAAGGTCGCCGACGACGTCCACCAGCAGCGCCTGAGCATCTCCAATCGCGACATGCGCCAGGACAAGCCGCTGGAGGTGTGCTTCATCAACTCCAAGG GCTTCGGCGGCAACAACGCCAGCGGCGTGGTGCTGTCGCCGCGAATCGCCGAGAAGATGCTGCGCAAGCGCCATGGCCAAGCGGCCTTCGCCGCCTACGT CGAGAAGCGCGAGCAGACCCGCGCCGCCGCCCGCGCCTACGACCAGCGCGCGCTGCAGGGCGACCTGGAGATCATCTACAACTTCGGCCAGGACCTGATC GACGAACACGCCATCGAGGTCAGCGCCGAACAGGTGACGGTGCCCGGCTTCAGCCAGCCGCTGGTATACAAGAAGGACGCGCGTTTCAGCGACATGCTCG ACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGCCGCCACAACGGAAAAGGCCCGGCTAGACCGGGCCTTTTCGTTTCAGTGCAGCGCGCGCGCCAGTTGGATCAGCTCGCTGCGCCACTCGGCAGCGCG CGGCAGGGCCAGGAAGGAGCCGTTGAGGTAGTCCTCGCGCGGCTCGTAGGTGAATGGCGCACCATGCAGGTCGAGCACCTCGCCGCCGGCGCCTTCCAGC ACACCCTGGGCGGCGGCCGTGTCCCATTGCGAGGTTGGCGTCAGGCGCGGATAGCAGTCGGCAGCGCCCTCGGCCAGCAGGCAGAACTTCAGCGAACTGC CGATGCTGGCTCGCCGCAGGTCGCCGAAGCGCTCGCTCAAGCCATCCAGCAGGCGCTCCTGGGCCGGGCTGCCATGGCGCTTGCTGGCCACCACGGTGAA GGCCTCCTCGGGCTCCAGGCGCACACTGATCGGTTGCGCGCGGCCATCGGCCTCCTCGCGCCAGGCACCGAGACCGGCGCCACCGTAGTAGCAGCGGCCG
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Amino Acid Sequence |
>beta-ketoacyl synthase
MSRLPVIVGFGGYNAAGRSSFHHGFRRMVIESMDPQARQETLAGLAVMMKLVKAEGGRYLAEDGTPLSPEDIERRYAERIFASTLVRRIEPQYLDPDAVH WHKVLELSPAEGQALTFKASPKQLPEPLPANWSIAPAEDGEVLVSIHERCEFKVDSYRALTVKSAGQLPTGFEPGELYNSRFHPRGLQMSVVAATDAIRS TGIDWKTIVDNVQPDEIAVFSGSIMSQLDDNGFGGLMQSRLKGHRVSAKQLPLGFNSMPTDFINAYVLGSVGMTGSITGACATFLYNLQKAIDVITSGQA RVVIVGNSEAPILPECIEGYSAMGALATEEGLRLIEGRDDVDFRRASRPFGENCGFTLAESSQYVVLMDDELALRLGADIHGAVTDVFINADGFKKSISA PGPGNYLTVAKAVASAVQIVGLDTVRHASFVHAHGSSTPANRVTESEILDRVASAFGIDGWPVTAVKAYVGHSLATASADQLISALGTFKYGILPGIKTI DKVADDVHQQRLSISNRDMRQDKPLEVCFINSKGFGGNNASGVVLSPRIAEKMLRKRHGQAAFAAYVEKREQTRAAARAYDQRALQGDLEIIYNFGQDLI DEHAIEVSAEQVTVPGFSQPLVYKKDARFSDMLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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