Pseudomonas syringae pv. tomato DC3000, PSPTO_2877
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGCAACATATCGAAACAGGCAGCCGGCTGGCCGATATCGACAATGTCAAAGCCATCAATCACGTGCTGAGCGTGATCTTCGGCGTGATCGCCGGGGCC GCTTTGCTGGGCTGCATCGCTTCGCTGATAGGCGCCTTCCTCGCGAACATCGATCGCAAACGCCGCAGCCTCGCCTTGTTGCGGCTCATGGGCTTCACCG CGCCCGCAGTGGCGGGCTATCTGGTCCTGCAGGCATTGCTGCTGGCCGTAGTCGGCTATGTCGGCGGCCTGGGGTTCTACTTTGCCGGCAGCGAGGCGTT CAATCACCTGCTGGGCGGCCAGCGCATCACCGGCGGTTTCATTTGCCAGATCACCCCGTTGCACGGCCTTGCCGCACTGGCGCTTGCGCTGGTGGTATCA GCGCTGGTTGCGCTGGCAGGTGCCACCCGAGCCATCCGAATTCAACCTGCGGAGAGTCTGCGTGAACTCTAGACACTGGGGCCATTTGCTCTTTGTACCC
|
|
| DNA Sequence for Gene |
>PSPTO_2877
TTGACCCTGATCAGCCTTCAGACGTTTGCCGCTGCCTGGGAAGAGAAACTCTACAACCCGATGCCTGACGCTGAAGACGTCGTGCTGCCGATGCCCTGTG ACGGCGCGATGGTCTTTCGCAAGGTGTACATCCCGCTGGCTGGCCCTCTGGATGACTACCCCGTCAATATCGGCGGCGACAACGCTGAATACGGTTACGT AGAGCAAACTCATCCGGCGTTTATCGCAGGAAGCTTTACCACCGAAAAAAATGCCAAATCGCGTTACTACCTCTTGGCGAAGTACGAAATGACGGTACTG CAATACAGCGCACTGACTCAGGCTGAATGCCCCGCGCCGTCGAACAAGCAGCGCCTGCCCGTGGTGTCGCTGAGCTGGATGCAGGCGATGGAGGCCGCCG ATAAATACAACATCTGGCTGCGTGAAAACGCCGCCGACAAACTGCCGAAAGAAGATGGCGTGGCAGGGTTCTTACGCCTGCCTACCGAGGTGGAATGGGA GTTTGCCGCGCGCGGAGGGCTGAACGTCAGCACGGCGGAGTTTCGAGACCTGCGTTATCCGATGCCGGAAGGCGTAAACGCCTACGAATGGTTTGCCGGA ACGCAATCGGCCAATGGCCAGTTACAACTGTCCGGCTTGCTCAAGCCCAACCCGCTCGGTCTGCACGACATGCTGGGCAACGTCGACGAGATGATGTTCG AGCCGTTCCGACTGAACAAGCTCGACCGCCAGCATGGCCAGGCTGGCGGCTATGTCGTGCGCGGCGGTGATTTCCGTACAGCACAGGGCGAGCTGCGAAG CTCGCTGCGCAAAGAGCGCAACTACTACGACGCCAAGGCCGCAGCCACCAGTAAAACCACCGGCGTGCGTCTGGCGTTGGCGTCCAGCACGCTGACCTCT CGCGAGCGCGTCAGCAGCATCGAAACCAGTTGGAAAAAGCTCGGCACCGGCAGCGGTGACACCAGCCAGGGCGAAGACAAGAGTGCCGTGCAGGCGCTGG GTACACTGGCCTCCGGCGTCGCCGACGAAGCCTTGAAAGAGAAACTCAAGGCCCTGGAAAACCAACTGCGCGCCAGCAACCAGCAACAGGAAGAAACCCG CGACCAGGCGATCCGCGCCAGCCTCAACCTTGGGGCCTTTCTCTGCACAAAAATGCTTGACGATGGCAAATACCTGGACTTCCTGCAGAAGAACTACGCG CTCAATTGCTCGGCCGCAGAGCAGGACGCCAGTTGCCCGATGCGCAAAGGCAAGCTCGACGAACAGAAAGACCGACTGCACAAGCTCAGCCGTTATTACG CAAGCAGCCTGGTGGACTCCGCCACGCTCTACGGCGAGCCGCTGCTGGCCCGGCAAATACCGGTCATGGGCGAAATCATCAGCCGCAACGAACAACTCAA AGAACTCAAGCCGTACTTGCAGACCCACTGGGTCAATCAGCAGGCATTTCTGAAAACCCAGAAGATCGACACCGACGCGTGGCTAAACCGCTGCAAGGCA GTCCAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCGACGTCAAGCTTACTCAAGGAGCAACAGCATGAAACACGTACGTAGCCATCTGCCGAGGGTCCTGCTGGGCCTGATGATCTCTGTCAGCCTGGTGCT GGCCGGCTGTGCCAACAACGGCACCGGCAGCAGCATGCTCGGTGGTTCCGGCACCGACCCCGATCCGCGCCTGACCAAAAGTACCGATTCGTCATTTTTC TCCACTTCGGGCCTCACCGCCTGCGCGGCCGCTGCCGGGGTTGGCATTCTGGCCTGTGCGGTGGCGAGCCCCAGCGACAAGGTCAAATGCATGGTCGTGG CCGGTATTGCAGCGTGCGGCGTGGCCATGGGGGCGAACTATTACTACGACTACCGTCGCAGCAAGTACTCCAATACCGCACAGCGCCTGCAGTTGATGAA TGACGACGTAAAAGCCGACACCGAAAAAGTGGCCCAGCGCACCTACACGCTGCAACAGGTGATCAACGACGACAAAGAGCGCATCGCCGGTATCCAGAAG
|
|
| Amino Acid Sequence |
>hypothetical protein
MTLISLQTFAAAWEEKLYNPMPDAEDVVLPMPCDGAMVFRKVYIPLAGPLDDYPVNIGGDNAEYGYVEQTHPAFIAGSFTTEKNAKSRYYLLAKYEMTVL QYSALTQAECPAPSNKQRLPVVSLSWMQAMEAADKYNIWLRENAADKLPKEDGVAGFLRLPTEVEWEFAARGGLNVSTAEFRDLRYPMPEGVNAYEWFAG TQSANGQLQLSGLLKPNPLGLHDMLGNVDEMMFEPFRLNKLDRQHGQAGGYVVRGGDFRTAQGELRSSLRKERNYYDAKAAATSKTTGVRLALASSTLTS RERVSSIETSWKKLGTGSGDTSQGEDKSAVQALGTLASGVADEALKEKLKALENQLRASNQQQEETRDQAIRASLNLGAFLCTKMLDDGKYLDFLQKNYA LNCSAAEQDASCPMRKGKLDEQKDRLHKLSRYYASSLVDSATLYGEPLLARQIPVMGEIISRNEQLKELKPYLQTHWVNQQAFLKTQKIDTDAWLNRCKA VQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|