Pseudomonas syringae pv. tomato DC3000, PSPTO_2808
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCGATAATCCTGCTCGACATCGATCATTTCAAACAGATCAATGACCTGCACGGTCATGAAACAGGCGATGTGGTACTGCAACGAGTGGCTGAGGTCA TCAGTTCAAGCGTGCGCAGCAGTGACATGGCTGCACGCTGGGGTGGCGAGGAGTTTTTGATCCTCATGCCCGACACAGCACTGAGCGACGGGCTGCAAGT GGCTGACCGCATATGGCTGTCCATCCGGGAAAAAGCCGGTCTGATCGACACGCTCGACATTGCTGTAACCGCAACCCTGGCAGTGGCTGCCGTCGGCGAG GGCGAAGCCTTTCAGATCGCCCTCAATCGTGCCGACACCTCGCTTTACCTGGGCAAGCAGCTAGGCCGAAACCGGGTCATGGTCGCTGGGTGAGCCGGCC GTTCACAGCATTCCTCGCGAGCGTGTAGACTTTCGCGCTTTGAGCGGCGGACATCCGTGCGTCGCTCCCTTATCGATTGTGTATTGATCAAGGCATGCTT
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| DNA Sequence for Gene |
>PSPTO_2808
ATGGATCTGCGTCAGCTCGAAGCCTTCGCGGCGGTCATGTCGGCGGGCAGTGTCACTGCCGCCGGGAAAATGCTCGGCCGCTCTCAGCCATCGGTCACTC GGGCCATTCAGGAGCTTGAACAGGAACTGGGCTTTGCGCTTTTCGAGCGCAGCGGGCCGAAGGTCACGCCTACCCACAAGGCGTTCATGATGTATGGCGA GGTGGAAAGCGCGCTGCTGGGCGTGCGTAATATCCGCCAGCGTGCGCAACACATTGCGCAGGAAGAAAACCATCAGATCAAGCTGGTGGCAATCTCGGCC CTTGCTGCCGGGCTGTTGCCCACGGCCTTGTCCCGGCTGCCCGAGCCTCTGCGCCCGCAGCAGATCCAGTTGCAGAGCATGTCTCCGGAGAATGTGGTTC AGGCGGTTCTGTCGAAGACTATGGATCTGGGGGCTGTAAGCCTGCCGCTGGAACATCGCGGCCTGGAGATTCACTGGATCGGCGAAGCGTCCTGCGTGGC GGTGTTGCCAGCCGATTCGCCGCTGGCCGCCCATGACGTGCTTTCAATGGAGCTGCTGCGCCAGCAAACGCTGATCACCATGGCCAACCCTTATCGTTTT CGTCGGCGTATCGACAAGGCGTTTCACGATGCCGGCGGCGAGCCACCGCGCATGCTCGATACCAATACCTCGCTGATTGCCATGCAAATGGCCAGAGTGG GGCTGGGCATTGCGCTGGTCGACCCGTTCACCGCCATAGGCGTACCGCTGCAAGACGTAGTGGTCAGGCCGATTGCCTGTTCCATTCCGTTTTTCTTCGG CCTGATTTCAGCTTTCGCCAGCCCGCTATCGGAGGTCGCGAGTGCGCTGGTGGAGGAAATTGCCGTCTGCGCGAAAGTCCTCCTGCCGGAGATGATCATG CACGAAGCCAGTGCTCACGATGCGCTGTTGCAGAGCATTTATGCAGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCAGCTAAGTTCAGACTAACTGGTAGCGGCCGGGGCGGCGAGCCGCAGGCTCGCGATCTGCTGGGAACCGGCAGCAAAACCGGCGCATGGGGTGTATC AGGCACAACCAGGGTGGCCAGTTTCAGGGCCGCTCGGGCGCCAACGTTCTGAATACCTCCATAAATTCCATTAAGGAATATCAATATTCTTTTTTGCGCA TTGCGAGAATAAAGAACGGCTTTTACTATTCGGATTAAGCATTCAATAGCTTTAAGAATTCATTTATTGCGACATTGGAATGATTTTTGAAGTGATTTGA ATCAGGCTCGGGCTTTGCGCCTGATCATCTTTCCGGGTACCGATCAATGTCCGATGTAAACGCACCTGCCGGTCTCGCGGCGCTGGAAGCTCGCCTGCAG CAGGATCTGGCGTGGCTGGATCTGCCCGCCAAGCCTTGGGTCAAGCCGAGGACGAACGCCGGGCAGGCTGTGCTTGATGTAGCAATCATTGGCGGCGGCA
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFALFERSGPKVTPTHKAFMMYGEVESALLGVRNIRQRAQHIAQEENHQIKLVAISA LAAGLLPTALSRLPEPLRPQQIQLQSMSPENVVQAVLSKTMDLGAVSLPLEHRGLEIHWIGEASCVAVLPADSPLAAHDVLSMELLRQQTLITMANPYRF RRRIDKAFHDAGGEPPRMLDTNTSLIAMQMARVGLGIALVDPFTAIGVPLQDVVVRPIACSIPFFFGLISAFASPLSEVASALVEEIAVCAKVLLPEMIM HEASAHDALLQSIYAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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