Pseudomonas syringae pv. tomato DC3000, PSPTO_2287 (prpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCCGCATGTGGGCGCCCGTGTGGTCGCGCTCAGCCACGCCGAATTGATCGAGCTGTATGAAATTCGTGAATCCCTGGAAGGCATGGCCTGCCGCTTGG CCGCCGAACGCATGAGCCAGGCCGAGATTGATGAGTTGCGCAGCGTGCTCGACACCCATGAACGCGATGCGGCGTTCCAGGCGGGCATCGGTTACTACCA GCAGGAAGGTGATTTCGACTTTCATTACCGGATCATCCAGGGCAGCGGCAACCGCACCCTCAGTCAGATGCTCTGCGGTGAGCTTTATCAACTGGTGCGC ATGTACCGCATCCAGTTCTCCACCACGCCCAACCGGCCCCGGCAGGCCTTTGCCGAACACCACCGGATTCTCGACGCCATCGCCGAGCGCGACGGCGAGC TGGCCGAATTGTTGATGCGCCGTCACATCGGCGCGTCCAGACGCAACATCGAGCGCCATTATCAGGCGGCTTCCCAGGCAACTTCCGACCGAGGTCAACC
|
|
| DNA Sequence for Gene |
>PSPTO_2287
|prpB
ATGAGTTCCAACAACACTACTCCCGGCCAGCGTTTCCGTGATGCAGTCGCCAGCGAACAGCCGTTGCAAGTGGTTGGCGCGATCAATGCCAACCACGCGC TGCTCGCCAGGCGCGCCGGGTTCAAGGCTATTTACCTGTCGGGTGGCGGGGTGGCTGCGGGTTCGCTGGGTATCCCGGATTTGGGGATCACCGGTCTGGA GGATGTGCTGATCGATGTGCGGCGCATCACTGATGTGTGTGATCTGCCGCTGCTGGTGGATGTCGACACGGGGTTCGGTTCTTCGGCCTTCAACGTGGCG CGCACCGTACGCTCGATGATCAAGGCGGGCGCGGCGGCGATTCATATTGAAGATCAGGTCGGAGCCAAGCGCTGCGGTCATCGCCCGAACAAGGAAATCG TTTCGCAGCAAGAAATGGTCGACCGCATCAAGGCTGCCGTCGATGCGCGAACCGACGACAGTTTCGTGATCATGGCGCGCACCGATGCGCTGGCGGTCGA AGGGCTGGAGTCGGCGCTGGAACGTGCTGCGGCGTGTATTGAAGCGGGCGCAGACATGGTCTTTCCGGAAGCGATCACCGAACTGGCGATGTACAAGCAA TTTGCCAACCGGGCGGGCGTACCGATCCTCGCCAACATCACCGAATTCGGTGCCACGCCGCTGTTTACTGTTGATGAATTGCGCGAGGCGGATGTGTCGC TGGTGCTTTATCCGCTTTCAGCCTTCCGCGCCATGAACAAGGCGGCGGAGAACGTCTACGGCGCGATCCGCCGCGACGGCAGCCAGAAAAACGTGATCGA CAGCATGCAGACCCGCATGGAGCTGTACGACGCCATCGATTACCACACCTTCGAAAAGAAACTGGATGCGTTGTTTGCGCAGAAGAAGGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGGCATAGAAAGCGAGGCTCACTCCCGCTTTTACGTCATGCACAGGTCTTGAGATGACTATCGTGCCAATGCTCCGCGTTGGCATGCAGTTCGTAATGC TCTGCGTCACAAGTCTCCAGCCTGGCGAGAAAGCAAACGTAATCGAAACTGAGGCCCGCATTCGTACGGCCTGAATCAGGGGTCAAGGCTCCAATGTGTG ACGCGGAGCGTCACGAAATGCATTACCACGCGAAGCGTGGGAACGATCATCATCGTGGTTTGAGCCCCGTTTTCCGGGCCCATTGGGATTGATGTAAACG ATAAGCGCTGAAGGTGTGAATTTATCTCGTGACGCTCTGCGTCCCATCACACAAAAACAATAGTGGAGAACACCATGGCTGAAGCAAAAGTATTGAGTGG TGCCGGGCTTCGCGGGCAGGTTGCCGGGCAGACGGCGCTGTCGACGGTGGGCATGGCCGGTGCCGGGTTGACCTATCGCGGTTATGACGTGCGCGAACTG
|
|
| Amino Acid Sequence |
>methylisocitrate lyase
MSSNNTTPGQRFRDAVASEQPLQVVGAINANHALLARRAGFKAIYLSGGGVAAGSLGIPDLGITGLEDVLIDVRRITDVCDLPLLVDVDTGFGSSAFNVA RTVRSMIKAGAAAIHIEDQVGAKRCGHRPNKEIVSQQEMVDRIKAAVDARTDDSFVIMARTDALAVEGLESALERAAACIEAGADMVFPEAITELAMYKQ FANRAGVPILANITEFGATPLFTVDELREADVSLVLYPLSAFRAMNKAAENVYGAIRRDGSQKNVIDSMQTRMELYDAIDYHTFEKKLDALFAQKKG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|