Pseudomonas syringae pv. tomato DC3000, PSPTO_2002 (ccoQ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AATCAACCAATCGAGGGCATGAAGCCGCGCAGCGCGCTGGAAGTCGAAGGCCGCGATGTGTTCATTGCCAACGGTTGCGTGGGTTGCCACTCGCAGATGA TCCGCCCGTTACGCGCCGAAACCGAGCGCTACGGGCATTACTCGGTCGCAGGCGAAAGTGTCTGGGATCACCCGTTTCTGTGGGGCTCGAAACGCACCGG GCCGGACCTTGCGCGGATCGGCGGTCGCTACTCGGATGAGTGGCACCGTGTGCACCTGAACAACCCGCGCGACCTGGTCCCTGCCTCGATCATGCCGGCC TATCCGTTTCTGGCCGGCAAACACATCGACAGCACGCAGACCGCGAAAAAGCTGCAAGTGCTGCGCACCCTTGGCACGCCGTACAGCGACGCCGATATTA CCGGTGCGGCGGCGGCCGTACAGGGCAAAACCGAAATGGACGCGCTGGTGGCCTACCTGCAAGGCCTCGGCACCCTTATCAAGAGCAAGCGGTGATCAGC
|
|
| DNA Sequence for Gene |
>PSPTO_2002
|ccoQ
ATGGACATCGGAATGATTCGGGGTCTCGGCACACTGGTCGTCATGATCGCTTTCATCGGCCTGATGCTGTGGGTGTTCAGCCCTGCACGCAAGGCCCGCT TTGACGACGCGACCCTGCTGCCGTTCGCAGATGACCCCGAGGCCATCGACACCGTCGAGCGGGCCAAGGCCGAGCGAGAAAATCGATCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTACGTTCTGGAGCCTGTACGTCACCCTACTGACGCTGGGCACAATCATCGCCATGCTCTGGCTGCTGCTGTCCACCCGCAAGGGCCAGCGCGAGGAGCC GACCGACGAAAAAGTCGGCCACTCGTTCGACGGCATCGAGGAGTACGACAATCCGCTGCCCAGGTGGTGGTTCCTGCTGTTCATCGCCACCCTTATATTC GCGCTGGCTTATCTGCTGCTGTATCCGGGCCTGGGCAATTGGCAGGGGCTATTGCCCGGTTACGAGTACAGGGACAAGGGCAGCACCTCGCAGTTCTCGG ATGGCCAGCAGGGCTGGAGCAGTGTTCACGAGTGGGAGCGCGAAGTCGCCAGTGCCGAGGCACGCTACGGCCCGCTGTTCGCCCGGTATGCAGCGATGCC CGTCGAGGAAGTGGCCAAAGACCCGCAGGCACTGAAAATCGGCGCGCGCCTGTTCGCGTCCAACTGCTCGGTCTGCCATGGCTCCGACGCTAAAGGTGCC
|
|
| Amino Acid Sequence |
>cytochrome c oxidase, cbb3-type, CcoQ subunit
MDIGMIRGLGTLVVMIAFIGLMLWVFSPARKARFDDATLLPFADDPEAIDTVERAKAERENRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|