Pseudomonas syringae pv. tomato DC3000, PSPTO_1976 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGGTATTGGCTTACGTCTACCAGATCCGCCAATTCCACTCAGGCCAGGGCAAGCGCCCCGACCCCCTTGGCGACGTCAAAATCCCTCCGGATTTGC AGCGCGATGCTTAGCCTTCAGTGGCTGTCATAAAGTTGCCTTAGCTCTCTTCCAACGCTCTGGCGTGCGCCTTTAAATGTACGGCGCGGCGCAGATCTGT GACGCGCAGCGTCACGACAGGCATTCCCATGCTGGAGTGGTAGGAACGATAGGTGTCCGGAAGAACACTATGGTGGCCCATGCTCCGCGTGGGCATGCCG TTCTGGACGCTTTGCGTCCGCTCTTTAGTGTGCGCAGCGCGAGGTTCTCTGGCTTCACTGATCACCTCGTCTTGCGCAATTTCTACCTCTAAAGCCTTGC CGGCACTGGCTTTGTAAAAGTTGGACAGCTTTTTGCAATAAGGTCGATACAGGTCGCCATCGGCGTCAATGTTTTGATCTAGTGCGCAGGTAACGAATCA
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| DNA Sequence for Gene |
>PSPTO_1976
|flhA
GTGGATCGCTCTCAATTACTCAGTAGCGCACGCAGCAACATCACAGGCCTTGGCCGTGGTCAGTTGGGCGTTCCGTTGTTGTTGCTGATCATGCTGGCAA TGATGATGTTGCCCATGCCACCGTTCCTGCTGGACGTACTGTTCACGTTCAACATTGCATTGTCCATCGTCGTGCTGCTGGTTTGCGTCTATGCCCTGCG GCCGCTGGATTTCTCTGTGTTTCCGACCATTCTGCTGGTCGCCACGTTGTTGCGTCTGGCGCTGAACGTCGCGTCGACGCGGGTGGTCATGCTTCACGGT CAGGACGGTCATGCTGCTGCGGGCAAGGTGATTCAGGCCTTCGGTGAAGTGGTGATCGGCGGTAACTACGTCGTCGGTATCGTGGTGTTCGCCATCCTGA TGATCATCAACTTCGTGGTCATCACCAAGGGTGCCGGGCGTATTTCCGAGGTGAGCGCGCGCTTCACCCTCGACGCGATGCCCGGCAAGCAGATGGCAAT CGACGCCGACCTCAACGCCGGCCTCATCGACCAGCCGGAAGCCAAGCGCCGTCGTGCCGAAGTGGCCCAGGAGGCCGAGTTCTACGGTTCCATGGACGGT GCCAGCAAGTTTGTACGCGGCGACGCAATTGCTGGCCTGCTGATTCTGTTCATCAACCTCATCGGCGGCATGCTGGTCGGTATCTTTCAGCATAATATGA CCTTCGCCGATGCGGGTCGCGTTTACACCCTGCTGACCATCGGTGACGGTTTGGTGGCGCAATTGCCATCACTGCTCCTGTCCACCGCTGCCGCGATCAT GGTGACCCGTGCTTCCGGTTCGGAAGAAATGGGCAAGCTGATCAATCGCCAGATGTTTGCCTCACCCAAGGCGCTGGCGGTATCCGCCGCGATCATGATC GTGATGGGGCTGGTGCCAGGCATGCCGCACTTCTCCTTTATCAGCCTTGGTCTGGTGGCCGCAGGTGGCGCATACCTGCTGTGGAAGAAAGACAATCAGG TGAAGGTCGAGGCGCTGGCCGAAGTGCAGCGTCAGCAGGACCTGCTGCCGTCGCCGACTCGCGTTCAGGACTCCAAGGAGCTGGGCTGGGATGACGTAAC CCCGATCGATATCATCGGCCTGGAAGTGGGTTACCGTCTGATTCCGCTGGTGGACCGCAATCAGGGTGGTCAACTGCTGGCGCGGATCAAGGGTGTGCGC AAGAAACTGTCACAGGAACTTGGCTTTCTGATGCCCACCGTACACATCCGCGACAACCTCGATCTGGCACCCAGCGCTTACCGTCTGACGCTGATGGGGG TGATCCTCGCCGAAGCCGAGATCTATCCGGATCGCGAACTGGCGATCAACCCCGGTCAGGTGTTCGGCACGCTGAATGGCATCACCGCCAGAGACCCGGC GTTTGGCCTGGAAGCCGTCTGGATCGAAATCAGCCAGCGCAGTCAGGCGCAGTCACTCGGTTACACCGTGGTAGACGCCAGTACGGTAGTGGCAACCCAC TTGAACCAGATTCTCTACAAGCACTCTCACGAGCTGATCGGTCACGAAGAAGTCCAGCAATTGATGCAATTGCTGTCCAAAAGCTCGCCCAAGCTCGCTG AAGAGCTGGTGCCTGGCGTGCTGTCCCTGTCGTCGCTGCTCAACGTGCTGCAGGCGTTGCTGGCCGAGCACGTACCTGTGCGGGATATTCGCAGCATTGC AGAGGCTATCGCCAACAACGCCGGGAAGAGTCAAGATACCGCCGCTCTGGTGGCCGCCGTGCGTGTCGGTCTGAGTCGCGCAATCGTCCAAAGCATTGTA GGCGTTGAGCCGGAGCTGCCTGTTATCACTCTGGAACCAAGGTTGGAACAGATATTGCTCAATAGTTTGCAGAAGGCTGGTCAGGGTCAGGAAGAAGGCG TTCTGCTTGAACCGAGCATGGCTGAAAAGCTCCAGCGTTCGTTGATTGAAGCGGCCCAGCGTCAGGAGATGCAAGGGTTGCCGGTCATTCTTCTGGTAGC AGGTCCTGTCCGGGCGATGCTGTCACGATTTGGACGATTGGCTGTACCGAACATGCATGTTCTGGCGTACCAGGAAATACCGGACAACAAGCAAGTAACC ATCGTAGCGACTGTCGGGCCGAACGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGAGTCATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAAGCCATGAAACTGGTTCGCGATGAGCTGGGCGCCGAGGCGGCCATCATCGG TAACCGGCGCATTGCCGGTGGCGTAGAGCTGACTGCCGCTCTGGATTACAAGCTGTCTGCCCTGGCGCCGCGTGTGCCGAATATGGAACTCGAAGACGAG CTGCGCAAGACTCAGTCGCGCATCGTCTCCGCTCAGGCCGAACTGAACAACCGTAGCGACAGCGATGCGTCGATCAACCTTCAGCTGTTTTCCGGCAAGC CGGTCAGTGCTGCCGACACGCATATCGAACCGACGCTCGAAGAGCCGCCACGCCCGTTTGCCTACGCTCCCGCACCGGCTGCAGAGCCTGCTGGCGGTCA GCGTGCCTTTGACTCGATGCGCTCTGAATTGAACGGCCTGCGCGAGCTGCTGGAAGTCCAGCTCGGCTCCCTTGCCTGGAACCAGCTACAAGGCAGCCGT
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRSQLLSSARSNITGLGRGQLGVPLLLLIMLAMMMLPMPPFLLDVLFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHG QDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLVGIFQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAIMI VMGLVPGMPHFSFISLGLVAAGGAYLLWKKDNQVKVEALAEVQRQQDLLPSPTRVQDSKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATH LNQILYKHSHELIGHEEVQQLMQLLSKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIV GVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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