Pseudomonas syringae pv. tomato DC3000, PSPTO_1731 (fumC-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CCTTCAGCTCGCTTTCGGTGAAGTTGGCGGTGTACAGCTTGACCATTTCAGGCTTGAGCTTGTTCCAGCCAATTGCCTGGTCCAGCGCAGTGTTGGCTTT GGCCTGATAGGTTTCGAGCAGCGCTTTTTTCGATGCAGGTGCCTTGGTTTCAGCAAAACGCTGGGCGAACATCTGTTGAACCTGTGCGTAGACCGGAGCG CCCAGGCGGTCGGCGTTGGCAAGCTTCAGGAATGTTTCGGCGCTCGCGTTGTGACTGGCGGTGTCGGCGAAGACCTGGCCGCTGGCACAGACCAGGGCTA CCGCGGTACAAATGGCACGAAGACGGGTCATCGAGTTTCCTTATCTAGCAAACGAGGCATTACCCCAGGGCCGACCATTCTGCGCTTATCTGGGCTTTTG GCTCAACCCCCGGTTCACCCAGCGGTTAAAAACCACTGCGCGGGAACCCTGTCGGCATATGGACACCTAACCCTGCAACGTACTTAAAGGAGTAAGACCA
DNA Sequence for Gene
>PSPTO_1731 |fumC-1
GTGAGCCGCACCGAAACCGACAGCATCGGCCCGATCGAAGTCCCTGAAGATGCCTATTGGGGCGCGCAGACCCAACGCTCACTGATCAACTTTGCGATTG GCGACCAGCGTATGCCGTTGGCCGTTCTGCATGCGTTGACCTTGATCAAGAAAGCCGCCGCACGCGTCAACGACCGCAACGGCGACCTGCCGGCCGATAT CGCCCGGCTGATCGAACAGGCTGCCGACGAGGTGCTCGACGGTCAGCACGACGCGCAGTTTCCGCTGGTGGTCTGGCAGACCGGCAGTGGCACGCAGAGC AACATGAACGTCAACGAAGTGATCGCCGGCCGCGCCAACGAACTGGCCGGCCAGGGCCGTGGCGGCAAATCGCCGGTCCACCCCAACGATCACGTCAATC GCTCGCAAAGCTCCAACGACTGCTTTCCGACAGCCATGCACATTGCCACTGCGCAAGCGGTCAAGGAACAGCTGCTGCCGGCGATTGCCGAGCTGTCCAG CGGGCTGGCCGAACAGGCCGCGCGTCACATGAAGCTGGTCAAGACCGGGCGCACGCACATGATGGACGCCACGCCGATCACCTTTGGCCAGGAGCTTTCG GGGTTCGTCGCGCAACTGGATTACGCAGAAAAAGCCATTCGCGCCGCCCTGCCCGCCGTCTATGAACTGGCGCAAGGTGGCACCGCAGTCGGCACCGGGC TCAACGCGCCGAAAGGCTTCGCTGAAGCCATCGCGGCAGAACTGGCTGCACTGTCGGGCTTGCCGTTCGTCACCGCGCCGAACAAATTCGCCGCACTGGC GGGCCACGAGCCGCTGGCTGCGCTTTCCGGCGCATTGAAAACGCTGGCCGGCACCCTGATGAAGATCGCCAACGACCTGCGCTTGCTGGGTTCCGGCCCG CGTGCCGGGTTGGCGGAAGTCAGGTTGCCAGCCAACGAGCCCGGCAGCTCGATCATGCCCGGCAAGGTTAACCCGACTCAGTGCGAGGCCCTGTCGATGC TGGCCTGCCAGGTTATGGGCAACGATGTGACCATCGGTTTTGCCGCCAGCCAGGGCCATTTGCAACTGAACGTCTATAAGCCGGTGATCATTCACAACGT ATTGCAGTCGATCCGACTGCTGGCCGACGGTTGCAGCAATTTCAATGAACACTGCGTCGCCGGCATGGAGCCAGACGCCGAAAAAATGGCTGAGCACCTT GAACGCGGCCTGATGCTGGTCACCGCGCTCAACCCGCACATCGGCTATGACAAGTCGGCGCACATTGCCAAAAAAGCCTACACCGAAGGCCTGACCCTGC GTGAAGCAGCGCTGGCGCTGGGTTACCTGACCGACGAGGAGTTCGACGCCTGGGTGCGCCCGGACAAGATGCTGGAGGCGGGCAGCAATGGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCCAAAAGCGGCGCGACACCCCTGGAAGGCAACGGCAAACGCATCCTGATGGTTTACGGTACGCCGAAAGCCATCAGTTTTTGCCACGCACTGGGCGAC GCCTACGCGCAGACTGCACGGGGCGAGGGGCACGTGGTGCGGATCATCAGGCTGGGCGAGCTGGACTTCGACCCCATTCTGCACAACGGCTACGATCAGA CCCAGACCCTGGAGCCTGACCTGCTCGAGGCGCAGCGCCAGATTCACTGGGCCGAGCATCTCGTGTTCGTCTATCCGGTCTGGTGGGGCGGCTTGCCGGC CCTGCTGACGGGTTTCTTCGACCGGGTGTTGACGCCCGGCTTTGCCTCCAAGGCCCACGGCCGCAAGCAGCACGCCAACGAATTGCTCAGGGGTCGGACG GCAGAACTGCTGGTGGCAATGGACACTCCGCCGCGCTACTTTCGCTGGATCTACGGCGCACCGGCTCACCGACAGATGGTGCGCACTATCTTGAGCTTTT
Amino Acid Sequence
>class II fumarate hydratase
MSRTETDSIGPIEVPEDAYWGAQTQRSLINFAIGDQRMPLAVLHALTLIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDAQFPLVVWQTGSGTQS NMNVNEVIAGRANELAGQGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIATAQAVKEQLLPAIAELSSGLAEQAARHMKLVKTGRTHMMDATPITFGQELS GFVAQLDYAEKAIRAALPAVYELAQGGTAVGTGLNAPKGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLAALSGALKTLAGTLMKIANDLRLLGSGP RAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDVTIGFAASQGHLQLNVYKPVIIHNVLQSIRLLADGCSNFNEHCVAGMEPDAEKMAEHL ERGLMLVTALNPHIGYDKSAHIAKKAYTEGLTLREAALALGYLTDEEFDAWVRPDKMLEAGSNG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site