Pseudomonas syringae pv. tomato DC3000, PSPTO_1679

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 145 220 1.6E-24
Gene3D G3DSA:6.10.250.690 - - - 81 117 3.4E-16
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 118 224 1.8E-26
Gene3D G3DSA:3.40.50.2300 - - - 1 80 9.5E-16
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 112 2.9E-39
CDD cd19934 REC_OmpR_EcPhoP-like - - 3 119 4.25283E-61
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 146 220 1.3E-22
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 132 220 2.93135E-31
FunFam G3DSA:3.40.50.2300:FF:000002 DNA-binding response regulator PhoP - - 1 80 1.1E-25
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 4 112 1.6E-26
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 220 5.4E-51
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 177 4.69E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.