Pseudomonas syringae pv. tomato DC3000, PSPTO_1499 (wspR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGGATCAGGTGTTTGCTGCAGGCATGGCCGAGTGGCTGTGCTCAGCGTCGGGCATGCCGGTACGCTTGGCAAAAGAGGGCGAAACGCCGCAAGTCGG TGTTGTACTGCTGGCCGGGACCAACCATCATATTCGCTTGTTGAAGGACGGCACGCTGGCGTACACCGCAGAGCCGGTCAACGAAGTTTACAGGCCCTCA ATCGATGTGTTTTTCGAGAGCGTGACTCGTTATTGGACTGGTGAGGCTGTGGGCGTTTTATTGACTGGCATGGGGCGCGATGGCGCGCAGGGGCTCAAGG CCATGCGTGAGCGGGGCTTTCTGACCATCGCTCAGGATCAGGCCAGTTCTGCGGTGTATGGCATGCCCAAGGCTGCCGCCGCCATTGATGCGGCCGTCGA AATCCGCCCGCTGCACACGATTGCGCCGCGCTTGATGGAGGTATTTACTCAATGATTGCTCAGGTGAAACCACCGGCTGTCGGCGAACAGGAGACGATTC
|
|
| DNA Sequence for Gene |
>PSPTO_1499
|wspR
ATGGATGACCTGCAGGCGGACGACATCAAAACCTCGGATGAAAACAGCGCAATGGTGCTGCTGGTCGATGATCAGGCCATGATTGGCGAAGCGGTACGGC GTGGTCTGGCCGGCCATGAATCGATCGACTTCCATTTTTGCGCCGACCCGCACCAGGCGATTGCCCAGGCTGTGCAGATCAAGCCGACGGTGATTCTGCA GGATCTGGTCATGCCCGGCCTTGACGGCCTGACGCTGGTTCGCGAATACCGCAGCAACCCGCTGACCCGTGACATTCCGATCATCGTGCTCTCCACCAAG GAAGACCCGCTGATCAAAAGCGCAGCGTTCGCGGCCGGGGCCAACGACTATCTGGTCAAACTGCCGGACAACATCGAGCTGGTGGCGCGCATTCGCTATC ACTCGCGCTCCTACATGACCCTGTTGCAGCGTGATGAAGCCTATCGCGCCCTGCGCGTCAGCCAGCAACAGTTGCTCGACACCAATCTGGTGCTGCAGCG CCTGATGAACTCCGATGGCCTGACCGGGCTGTCGAACCGTCGCCACTTCGACGAATACCTGGAGCTGGAGTGGCGTCGAGCGACCCGCGATCAGGCGCAG TTGTCGCTGCTGATGATCGATGTGGACTACTTCAAGGCCTACAACGACAACTTTGGGCATCTGGAGGGCGACGAAGCCCTGCGTCAGGTGGCCAAGGCAA TCCGCAACAGTTGCAGTCGCCCGTCGGACTTGCCGGCGCGCTACGGCGGCGAGGAATTCGCCATGGTCCTGCCCAACACGTCGCCGGGTGGTGCGCGTCT GCTTGCTGAAAAACTGCGCCAGAGCGTGGCCGGCATGAACATCCCGCACATCGCCCCGGTGCCGGGTTCCAGCCTGACCGTGAGTATCGGCGTCGCCACC GTGACGCCGCAGGTGGGCCAGCACAGCAGGCAACTGATCCTCGACGCCGACAAAGGGCTGTATCTGGCCAAGAACAATGGGCGCAATCAGGTGGCTGCCG GCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TATCACCCGCGGCAGATAAAATAGGCAGCCCGCGCGGGCTGCTTTCGCGGCGCGCCTTGGGGTATACTCGTCGGCTTTGAAAATTTCGCCTGCGAGTGCT GCCTACCATGGAAATCAACCCGATCCTAAACAGCATCAAGGATTTGTCCGAGCGCTCCGAAACCATTCGGGGGTATCTTTGACTACGATCACAAACATGA TCGTCTGACCGAAGTAAACCGCGAGCTCGAAGATCCCAATGTCTGGAACAACCCGGCCTACGCTCAGGAGCTGGGGCGCGAGCGCTCGTTGCTGGCGCAG ATCGTCGAAACCCTGGACGAAATGTCCTCCGGGCTGGTCGACGCCAAAGACCTGCTGCTGATGTCCGCCGAAGAAGAAGACCAGGCTGCCGTCGACGACG TGGCTGCCGAAGTCGAGCGCCTGCGTGCCTCGCTGGAAAAGCTCGAATTCCGCCGCATGTTCAGTGGCGAGATGGACCCCAACAACGCCTATCTGGACAT
|
|
| Amino Acid Sequence |
>diguanylate cyclase response regulator, WspR
MDDLQADDIKTSDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTK EDPLIKSAAFAAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQ LSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHIAPVPGSSLTVSIGVAT VTPQVGQHSRQLILDADKGLYLAKNNGRNQVAAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|