Pseudomonas syringae pv. tomato DC3000, PSPTO_1284

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 142 269 7.4E-34
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 146 254 3.2E-26
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 73 122 8.0E-8
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 346 854 7.8E-66
PANTHER PTHR30069 TONB-DEPENDENT OUTER MEMBRANE RECEPTOR IPR039426 TonB-dependent receptor-like 117 855 1.5E-110
Gene3D G3DSA:3.55.50.30 - - - 45 141 8.3E-22
NCBIfam TIGR01785 JCVI: TonB-dependent heme/hemoglobin receptor family protein IPR011276 TonB-dependent haem/haemoglobin receptor 130 853 1.5E-128
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 72 123 3.3E-10
SUPERFAMILY SSF56935 Porins - - 131 853 2.56E-120
NCBIfam TIGR01786 JCVI: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor 131 854 0.0
CDD cd01347 ligand_gated_channel - - 155 856 1.19778E-94
MobiDBLite mobidb-lite consensus disorder prediction - - 310 333 -
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 270 856 2.3E-127

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.