Pseudomonas syringae pv. tomato DC3000, PSPTO_0824 (pilS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAAGGACTCCATCCCGAAAGAGCTGTTGCCGGAAAATCAGGCAGAGCTGGACGAGCAGGCGGAAAAAGACGCCGAAGCGAAAGGCACCAAAAGCCGCT CGTGGTTCAGCTACATGACCCTGGGTCTGTTCGACTGACTGATAGTAGCTAGCTCAGAAAAGAGGCCTGCGGGCCTCTTTTTTTATGCATCACATTTATA AGGCACAGCCACTGTGCGCCCGCCTGCCGCTTGGCTACACTGCGCCATCGTCAATCACTAAGCTGGTAGTCATGGTTCGCTTACTCATGTGGGTCGCGTT GATCGCGGCGGTGATCTGGTTCGTCAAGCGCCTGATCAATCCCCCCAAGCCCAAGCCACGCGCAGAGCCGCCCGAAATCGCTGCTACCCCGATGGTGCGT TGCGCACACTGCGGCGTTCACCTGCCTCAGGATCGCGCGTTGAGCCAGGAAAAACAGTGGTATTGCAGCGAGGCACACCGACTGGAAGGCCCTGCGGCAC
|
|
| DNA Sequence for Gene |
>PSPTO_0824
|pilS
GTGACCGCTGAGACGCCTTCGCTTACCAGCCCGCAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCATTGGCGTCGTGCTGGTTCTGT TGATCTCCAGCAGCCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTTCGGGCTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGT GGTGCTGCTGGAGCGCCCCAGCCGCCAGGCGCAGCTGTTTGGCTTGGCGATGACCGACGCAATCATGCTTTCCGGGCTGTTTTATGCGGCCGGCGGGCCG TCGAGCGGCATCGGCAACCTGTTGATCGCATCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGCATCGGCCTGTTGATCGCTGCTGTTTCTGCCATTG GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGTTCTCTGGGTGCGCTGTGCTTCGCCGCCGC GCTGTTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACGGGCAGCGGATGTCGACAGCCTTGAAGAGCTCAATGCGCTG ATCCTGCAGCGCATGCGCACAGGCATTGTGGTACTGGATGCGCGCCGCCAGGTGGTGCTGGCCAATCAGGGGGCCTTGACCCTGCTCGGCCATGAACGAT TGGTCGGTCAGGTCATCGACGCTTACTCGCCGCAGTTGGTCGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACCTC ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATCTTCCTTGAAGATCTGTCGCAGATTGCCCAT CAGGCGCAGCAGCTCAAGCTTGCTGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAAATACGCAACCCGTTGGGTGCGGTCAGCCATGCTGCGCAGT TACTCAACGAGTCGGAAGACCTCAGCGCGCCGGATCGCCGTCTGGGGCAGATCATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCT GCAATTGTCTCGCCGACGCGAAGCACAACCCGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGTAGCTCGGCCGCTGCGGAT CAGTCGATTCATGTGCAAATAAGCTCAGGCATGCTGACCACTCGCATGGACGCCGGGCAACTGACCCAGATCATCACCAACCTGGTGCAGAACGGCCTAC GCTACAGCCGCCGCAATCACCCGTCGGCGCAGGTCTGGCTGAACCTGCACCATGACCGGGAAAGCGATTTACCCATCCTGGAAGTGCTGGACGACGGGCC GGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCGTTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGC GAAAGCAATCAGGCGCATCTGGAATATATCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACCCTCGGGCGCATGAAGCTCGACACGCGCAG CGCCCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGACCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTG GTGCAGCACATCCAGCACGGCTACCCCCATGTGCCAGTGGCGATGATCACCGCCCACGGCAACCTGGACACGGCGATTCATGCGTTAAAAGCCGGGGCCT TCGATTTCGTGACCAAACCGGTGGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCTCTGAGCCTGCCCTCCGCCACTCAACCGGTGCACAGCATCGA CAGCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCCATCTACATCAGCGGCGAATCG
|
|
| Amino Acid Sequence |
>sensor protein PilS
MTAETPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLFGLAMTDAIMLSGLFYAAGGP SSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLGALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNAL ILQRMRTGIVVLDARRQVVLANQGALTLLGHERLVGQVIDAYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAH QAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAAAD QSIHVQISSGMLTTRMDAGQLTQIITNLVQNGLRYSRRNHPSAQVWLNLHHDRESDLPILEVLDDGPGVSEQHLSKIFEPFFTTESKGTGLGLYLSRELC ESNQAHLEYIPRPHDGGSCLRITFAHPFKTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|