Pseudomonas syringae pv. tomato DC3000, PSPTO_0815
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGGCATGAACAAGACCATGCGTTTCACCTCGACAAAGACTTGCACGTTTCCCGCCAGACAGCGCGGTATGGTGCTGCTGGTCAGCCTCGTATTTCTG TTACTGCTGACATTGCTGGGCATTTCATCCATGCAGAACGCCACGCTGCAGGAAAAGATGGCGGGCAGTGTGACGGTTCGCAATGTTTCGTTTCAGGCGG CTGAGGCACAGTTGCGTCTCGGTGAGTCGAAGATCATGGAGTCCGGTTTTGCAATGGTTGTCTGTAACTCACTTGCCGCCTGCGCCCCGCCTGTTGATTC GACTACAGTACTCAATCCTGGGGTGGGTACGTCTGGCGTCAACTGGATTGGCACAAGCGCCGGGATGTTTGGCATCCAGAATCTGGGTACAACGGCCGCA CCCATAAAACGCCCTGCAAATTGCTCGGGTTCGGTCACGATGTATCGGGTAACAGCCATCGCCATTCAAGGCACTTCACGAACAGTGCTGGAGAGTATTT
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| DNA Sequence for Gene |
>PSPTO_0815
ATGCCAACTGCTAAGGCGCTTCGTGGTGGCTTGAAATACCTCTATGGCGCTTTGCTGGCGCTGTATCTGGCGAGCCCGGTTTATGCCTTCACGCCGGCGC AAGTCCCTTTGTTGACCTCCCCGGCAGTGCCGCCCAATCTGATGTTGCTCGTGGACAACTCGGGCAGTATGTACAACATCATCTGGGATTCGGGGTTTGA CGCGTCGGTCAATCGTCCGGACATCAGTTACTTCTCAACGCAGTGCTTAAGCGGTTTGATAACAGTAGTTTGCCCATTTTTGAGCACCCTGTCGGGTGAT GAAACGCTCTCGCTGGGCGATATCAATGGTACCAATATCCTCACGTTGCAACTGAGGTGTCCGTTTGGGGGGCGTCCGGTTTTTCGTAATGACATTCAGT ACTGTCTGAACCTGCCCGATCCGGCCGGTAACGGGCTGACGCGTTATACGGCTGATTACCTGTCCTATCTTATTGATCTGGTCAGCCCTGGCTTTTTTGG CGTTCGCAACTACACCAATGGCGTGATCCCGAACGACTTCAGAATGAATGTCGCGAAAACCGTAGCGACCAACCTGGTAACCAACAATACGACGCTCAGA ATCGGGCTCGCGTCCTTCAACCAACCGACCAACAGTGACCTTGGCCCAGGAGGCAAGATTGCCAGGCTTGTCACTGACCTGTCTCCGGTAGCGATCAGTA CCTTTCAACCTTCCGGCGTGTCTCAACAGCAGGCCACTCAAAATATCACTGACCTCAAGACCGCTATCACCAACCTGACGCCGTCAGCCAACACGCCACT GGCTGAAACCTATTACGAGATCACGCGGTATTTTCGCGGTATGTCACCGTTCTATCAAAGCGGCTCCAACTACGTGAGTCCGATTCAATACCGCTGCCAG AAAAACTACGGTGTTGTGGTTACCGATGGCCTGCCGACCTATGACCGGACGTTTCCAGCCAACGACCCTGACGATGTTCTGGACACCACGCGCTCATTAC CCAACTGGGATTTAAATGCAGCCAATGACGGCGACAACCTGTCCGGTGATGGTGAAGGGGATACACTTTATCTGGACGACCTGGCCAAATTTGCCTATGA CATCGACCTGCGGCGGGATGCGGTGACGACTGGCGGCGACCTGACCGGAAAAAGCTGGGATACCGCAGGCTTTGCGAAGCAGAACATGAGCACTTACACC ATCGGGTTCACCGCATCTAACCAGATGCTGAACGATGCTGCCGACGATACCCATGGCCATGGCAAATACTTTCAGGCCAATGACAGCACGGGGCTGACTT CAGCCTTGAATCTGGCGTTGAGCGATATTTACGCCAAAGTCGGCTCTGGCGCAGGTGGGGCAGCGAACTCATCAACGCTCCAGGCGGGTACCCAGTTTTA CCAGACGCTCTATGACCCGACCGATTGGCACGGCACCATCAGAGCCTTCAATCTGGATCAGACCACGGGAGCATTGAGTGCCCCCGTATGGACTACCGAC ACTGCCATTGTCAGTGGATCAACGGCACCGGTTTTTGAATCCTGGAACACGGTTTCCACTTCGGGAAGGATCGCTCTGGATTACAACAACTTCAGCCCTG CTCAGCAGGCGGCACTGAATGCAACATTGCCAGGCAATGCCAACGGTATAGAGCTTATTAACTGGGCCAAAGGCACTGCCAACGCGAAGTTTCGGCCACG CACCCGGCTGTTGGGCGATATCGTCAACTCTTCGCTAGGTACTGCGTTCCCTAAGCAAAAGACCGCCGCCGACCTGACGGGTGATACCACCTACACCACC TATCTGGCCATCAAGGCAAACAGCATGAGCTCCAGCATTCTGGCCAATGCCAATGACGGCTTTTTCAACGTCATCAATTCTGGCGATGGTTCAAGGCGCT ATGCGTATATGCCTTCGACGGCTCTGACGTCGCTGGCGACCATCGCATCAACCACCTATGGATCTGGCGTTCACAAGTTCACCGTCGATGGCCAGATCGC AGTGTTCGATACACAGCTTGCCGCGGGTTCCTCATGGCGCACCGTTGCCTATGGTGGTACGGGGGCGGGCGGCAAAGCGTTCTTCGCAATCAAGTTATTC GAGGGTGTCAGCAACACTGTCAGCGCATTATGGGAGGTCAAGGCCCCCGACACTTCCGACACCAACAATAAATTCAACAATCTTGGCTATGCCTATGCAA GGCCTGATGTTGCCCGGATGGCGGATGGCACCGGGATTGTGGTGGTCGGCAACGGTTACGGCAGCTTCACCGGCAGAGCTTCGCTCTATGTATTGAATGC CAACACCGGGGCGTTCATTGCCGAGATTCAGACACCGATCCTTAATAGCGAAACCGATAACGGGCTTTCTTCGGTCAAATTGCGCGTCAACTCTCAGAAT GTGGTTCAGGCTGCCTATGCGGGCGACCTGAAGGGGCGGTTGTGGAAGTTCGACTTGAGTGGCGCAACCGCTGCCAGCTGGAAAATAGCGTTTGGCGGCG CGCCTTTGTTCACTGCACCGCGAGGCGCCAATCAGCCAATAACGGTTCAGCCATTCGTGCTTGATCATCCGCTCAACGGCAAGATCGTGTATTTCGGCAC CGGCAAGTTCCTCGAAGTTGCAGACAAGCAGACCTCCGCTCTTCAGGATTTCTACGCGATATGGGATGCGGACTCCGGAGCGGGCGGCACGGTCGAGGCG AACCTGCAAGCGCAGGCGGTCAATGGCAGTGTTGTCAGTAACGGAACCACCTATTTCACGTCGACAACCAACGATGTGGATTGGTCAGTCAAGAAGGGCT GGTACATGCCGCTTTCCGCCGTAGCGCCCTATCTGGGGGAGCGAATCATTTACCCCGCGCAGACCAGTCGAGGCCGGATTATCTTCTCGACAGCATCCGT GAACTCCGCTGACCCCTGTGAAAGCACAGGCACCGGGCGGGTATTTGAACTCAATGCTGCCACCGGCAGCATGCTCAACTACCAGGTGCTTGATACCAAC GGCGATAACAGCATCAACAATTCAGACCTGTTTGCCGCCGGGATCGGGTACACAGGTATCCCCGTCGTATCCGCTATCGTTTCGGGTACCGGGGACGGGA ATGAGGTGAAGATCATTAATAACTCCACGGGTAACACGCCTGATGTTCTGAAGGAAAAGGGCGGGAGCGGCAACCAGCGCATCATGTGGCGACAAATCCA ATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAAACGAATCATGCGAGCGACATCCAGGGGCTTTACGTTAATCGAACTCATGATCGTCGTGGCGATTGTCGGTATTCTGGCCGCCATCGCGTACCCCAG TTATACCGAGTACGTGAAGCGTACTCAGCGCTCGGCAGTCGCCAGTTTGCTTTCCGAACAGGTTCAAGCGCTGGAGCGTTTCTATTCGCAAAAGGGCAAT TACGCTGATTACAAAGGTGTGGTTGGCGGCAATGCCTATTACACGATTACACCGGTCCTCAACGCCACTGATTTCACCCTGACAGCAGCCCCCACCGGGG GCACTATGATGGCCGGCGACAAATGCGGCAGTTTCGTCATCACCAATACCGGTGCGCGCAGTAACTCAGGCGCGACCACTGGCGTGACCACCAAAGACTG CTGGGGCCGCTAAAACCGTTTTTCCTTGTTCCGAGACCAAGATGCCCAAGCAAAAAATAGTCATTGTCGGCGGCGGTGTCATAGGTCTGCTGACCGCCTT
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| Amino Acid Sequence |
>type IV pilus-associated protein
MPTAKALRGGLKYLYGALLALYLASPVYAFTPAQVPLLTSPAVPPNLMLLVDNSGSMYNIIWDSGFDASVNRPDISYFSTQCLSGLITVVCPFLSTLSGD ETLSLGDINGTNILTLQLRCPFGGRPVFRNDIQYCLNLPDPAGNGLTRYTADYLSYLIDLVSPGFFGVRNYTNGVIPNDFRMNVAKTVATNLVTNNTTLR IGLASFNQPTNSDLGPGGKIARLVTDLSPVAISTFQPSGVSQQQATQNITDLKTAITNLTPSANTPLAETYYEITRYFRGMSPFYQSGSNYVSPIQYRCQ KNYGVVVTDGLPTYDRTFPANDPDDVLDTTRSLPNWDLNAANDGDNLSGDGEGDTLYLDDLAKFAYDIDLRRDAVTTGGDLTGKSWDTAGFAKQNMSTYT IGFTASNQMLNDAADDTHGHGKYFQANDSTGLTSALNLALSDIYAKVGSGAGGAANSSTLQAGTQFYQTLYDPTDWHGTIRAFNLDQTTGALSAPVWTTD TAIVSGSTAPVFESWNTVSTSGRIALDYNNFSPAQQAALNATLPGNANGIELINWAKGTANAKFRPRTRLLGDIVNSSLGTAFPKQKTAADLTGDTTYTT YLAIKANSMSSSILANANDGFFNVINSGDGSRRYAYMPSTALTSLATIASTTYGSGVHKFTVDGQIAVFDTQLAAGSSWRTVAYGGTGAGGKAFFAIKLF EGVSNTVSALWEVKAPDTSDTNNKFNNLGYAYARPDVARMADGTGIVVVGNGYGSFTGRASLYVLNANTGAFIAEIQTPILNSETDNGLSSVKLRVNSQN VVQAAYAGDLKGRLWKFDLSGATAASWKIAFGGAPLFTAPRGANQPITVQPFVLDHPLNGKIVYFGTGKFLEVADKQTSALQDFYAIWDADSGAGGTVEA NLQAQAVNGSVVSNGTTYFTSTTNDVDWSVKKGWYMPLSAVAPYLGERIIYPAQTSRGRIIFSTASVNSADPCESTGTGRVFELNAATGSMLNYQVLDTN GDNSINNSDLFAAGIGYTGIPVVSAIVSGTGDGNEVKIINNSTGNTPDVLKEKGGSGNQRIMWRQIQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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