Pseudomonas syringae pv. tomato DC3000, PSPTO_0641 (rplF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002162
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002162
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002162
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002162
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 12 82 1.0E-16
Pfam PF00347 Ribosomal protein L6 IPR020040 Large ribosomal subunit protein uL6, alpha-beta domain 90 164 4.2E-19
PIRSF PIRSF002162 RPL6p_RPL6a_RPL9e_RPL9o IPR000702 Large ribosomal subunit protein uL6-like 1 177 5.2E-47
PANTHER PTHR11655 60S/50S RIBOSOMAL PROTEIN L6/L9 IPR000702 Large ribosomal subunit protein uL6-like 1 177 2.6E-47
Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. IPR019906 Large ribosomal subunit protein uL6, bacterial-type 1 176 37.973927
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 141 162 1.1E-33
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 99 115 1.1E-33
FunFam G3DSA:3.90.930.12:FF:000002 50S ribosomal protein L6 - - 1 82 1.6E-27
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 3.6E-25
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Large ribosomal subunit protein uL6, bacterial-type 71 96 1.1E-33
Coils Coil Coil - - 168 177 -
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 1.73E-36
FunFam G3DSA:3.90.930.12:FF:000001 50S ribosomal protein L6 - - 83 177 2.1E-44
Gene3D G3DSA:3.90.930.12 - IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 83 177 2.1E-39
SUPERFAMILY SSF56053 Ribosomal protein L6 IPR036789 Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily 1 82 7.98E-23
NCBIfam TIGR03654 JCVI: 50S ribosomal protein L6 IPR019906 Large ribosomal subunit protein uL6, bacterial-type 2 176 3.8E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.