Pseudomonas syringae pv. tomato DC3000, PSPTO_0559

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 52 270 7.06E-33
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 543 663 7.33E-19
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 339 452 2.7E-12
Gene3D G3DSA:3.40.190.10 - - - 42 268 2.2E-41
Coils Coil Coil - - 446 466 -
Pfam PF08448 PAS fold IPR013656 PAS fold-4 340 448 9.7E-9
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 60 269 7.5E-23
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 345 455 1.23E-21
CDD cd01007 PBP2_BvgS_HisK_like - - 49 269 1.58457E-41
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 467 533 7.3E-14
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 575 663 4.9E-6
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 571 664 3.1E-7
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 51 270 1.4E-14
CDD cd00130 PAS IPR000014 PAS domain 352 443 4.29985E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 322 443 1.1E-20
Gene3D G3DSA:1.20.5.1930 - - - 444 526 6.3E-12
SMART SM00091 pas_2 IPR000014 PAS domain 333 399 9.1E-4
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 535 662 2.4E-29
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 576 661 2.45274E-30
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 206 666 4.4E-59
Gene3D G3DSA:3.40.190.10 - - - 136 231 2.2E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.