Pseudomonas syringae pv. tomato DC3000, PSPTO_0538 (dnaG)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00400	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00400	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08278	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00400	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pst03030	DNA replication	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	425	3.6E-9
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	486	502	-
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	1.1E-109
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	1.1E-42
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	100	9.01E-38
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	3.1E-53
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	1.8E-34
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	639	0.0
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	468	508	-
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	639	30.192715
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	513	638	7.0E-38
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	101	2.0E-36
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	5.9E-49
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	253	5.8E-44
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	8.5596E-36
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	427	6.0E-20
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	110	242	2.0E-49
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	328	1.0E-16
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	1.4E-41
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	420	0.0
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	647	0.0
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	514	637	1.5E-25
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	370	5.6E-41
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	5.4E-21
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	502	646	8.5E-36
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	513	639	5.89E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.