Pseudomonas syringae pv. tomato DC3000, PSPTO_0373
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 569 | 851 | 1.1E-31 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 677 | 713 | 7.4E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 736 | 775 | 7.3E-4 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 231 | 304 | 1.0E-20 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 526 | 562 | 1.6E-7 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 73 | 138 | 1.8E-19 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 644 | 672 | 0.0065 |
| PANTHER | PTHR32305 | - | - | - | 566 | 797 | 1.8E-11 |
| CDD | cd14742 | PAAR_RHS | - | - | 60 | 147 | 3.12325E-38 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 456 | 568 | 1.1E-11 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 577 | 608 | 4.8E-4 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 60 | 147 | 3.2E-26 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 526 | 565 | 1.6E-9 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.