Pseudomonas syringae pv. tomato DC3000, PSPTO_0328 (ompR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 161 238 9.6E-25
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 136 244 8.1E-29
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 8 131 4.7E-40
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 166 238 2.3E-21
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 11 122 4.6E-41
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 12 238 3.4E-46
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 150 238 1.88534E-27
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 13 123 6.4E-29
Gene3D G3DSA:3.40.50.2300 - - - 8 90 1.8E-19
FunFam G3DSA:1.10.10.10:FF:000099 Two-component system response regulator TorR - - 134 241 6.8E-30
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 138 240 5.67E-26
CDD cd17574 REC_OmpR - - 14 112 2.11403E-44
Gene3D G3DSA:6.10.250.690 - - - 91 128 1.6E-17
FunFam G3DSA:3.40.50.2300:FF:000008 Two-component response regulator OmpR - - 9 90 1.6E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.