Pseudomonas syringae pv. tomato DC3000, PSPTO_0114

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0114
NCBI Old Locus Tag	PSPTO0114
Name	Synonym: PSPTO0114
Replicon	chromosome
Genomic location	134647 - 136311 (+ strand)

Cross-References

RefSeq	NP_789973.1
GI	28867354
Entrez	1181722
INSDC	AAO53668.1
NCBI Locus Tag	PSPTO_0114
NCBI Old Locus Tag	PSPTO0114
UniParc	UPI00000082FF
UniProtKB Acc	Q88BA3
UniProtKB ID	Q88BA3_PSESM
UniRef100	UniRef100_Q88BA3
UniRef50	UniRef50_A0A0B7DH21
UniRef90	UniRef90_D7HTD9

Product

Feature Type	CDS
Coding Frame	1
Product Name	GGDEF domain/EAL domain protein
Synonyms
Evidence for Translation
Charge (pH 7)	-11.09
Kyte-Doolittle Hydrophobicity Value	-0.142
Molecular Weight (kDa)	62.0
Isoelectric Point (pI)	5.84

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 453 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004870 (523 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0114 Search term: GGDEF domain/EAL domain protein

Human Homologs

References