Pseudomonas syringae pv. tomato DC3000, PSPTO_0004 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTTGAAAAGACTTTGAGCGAACTTGTTGAACTTGAAGGTTTGACCCTTAGCTACTACCGAGGATGGGACAAGGAAAAAGAGCTGAGCACTGTGCTC GCCTCCTCCCTGAATCGCGATCAGCAAATGGGCCACACCCAGGCAGGACCACAACGTGCTGATCTGCGCCTTAGATTAGGTGCCCACAACGCGGCAGATA TCTTGTCACGTGGTCAGCAAAAATTGGTGGTCTGTGCACTGCGTATTGCTCAAGGACACCTGGTCAGCCAGGTCCGTCGCGGCCAGTGTATTTACCTGGT GGATGACTTGCCCTCCGAACTGGACGACAACCATCGACGCGCGCTTTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTATTTATCACCTGTGTAGATCAA GAATTTTTGAGGGAAGGCTGGCAGACGGATACGCCAGTCGCATTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGATTGC
|
|
| DNA Sequence for Gene |
>PSPTO_0004
|gyrB
ATGAGCGAAAACCAAACGTACGACTCGTCCAGCATTAAAGTGCTGAAAGGACTTGATGCCGTACGCAAGCGTCCCGGAATGTACATCGGTGATACAGACG ATGGCAGCGGTCTGCACCATATGGTGTTCGAGGTGGTTGATAACTCGATCGACGAAGCATTGGCAGGCCATTGCGACGACATCAGCATCATCATCCATCC AGACGAATCTATCACCGTGCGCGACAACGGCCGCGGTATTCCGGTAGACGTGCATAAAGAAGAAGGCGTGTCGGCAGCCGAAGTCATCATGACCGTGCTC CACGCGGGTGGTAAGTTCGATGACAACTCCTACAAAGTATCCGGCGGTTTGCACGGTGTAGGTGTTTCCGTGGTCAACGCCCTTTCAGAACTTCTGTTGC TGACAGTGCGTCGCAGCGGCAAGATCTGGGAACAGACCTACATTCACGGTGTTCCACAAGAACCGATGAAAATCGTCGGCGAAAGCGACAGCACCGGCAC CCAGATTCACTTCAAGCCATCTGCTGAGACCTTCAAGAATATCCACTTCAGCTGGGACATTCTGGCCAAGCGGATCCGTGAACTGTCGTTCCTGAACTCC GGTGTTGGCATCGTCCTCAAGGACGAGCGTAGCGGCAAGGAAGAACTGTTCAAGTACGAAGGCGGTTTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACGCCGGTCAACGAAGTGTTCCACTTCAATGTCCAGCGCGATGACGGTATTGGCGTCGAGATTGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCACAGCGCGATGGCGGCACTCACCTGGTGGGGTTCCGATCCGCACTGACGCGTAACCTGAACAACTACATCGAGCAG GAAGGTCTGGCCAAGAAGCACAAGGTCGCGACCACCGGTGACGATGCGCGTGAAGGTCTGACTGCAATTATCTCGGTCAAAGTACCTGATCCGAAGTTCA GCTCGCAGACCAAAGACAAGCTGGTTTCGTCCGAAGTCAAAACTGCAGTCGAACAGGAAATGGGCAAGTACTTCTCCGACTTCCTGCTGGAAAACCCGAA CGAAGCCAAAGCCGTCGTCGGCAAGATGATCGACGCAGCCCGTGCCCGTGAAGCCGCGCGCAAGGCCCGTGAGATGACTCGCCGTAAAGGCGCGCTGGAC ATCGCCGGCTTGCCAGGCAAACTGGCTGACTGCCAGGAAAAAGACCCTGCCCTCTCCGAACTGTACCTGGTGGAAGGGGACTCTGCTGGCGGATCAGCCA AGCAGGGACGTAACCGTAGAACCCAGGCCATCCTGCCTCTTAAGGGCAAGATTCTGAACGTTGAAAAAGCACGCTTCGACAAGATGATCTCTTCTCAGGA AGTGGGCACCTTGATCACCGCGCTGGGCTGTGGCATTGGCCGCGAAGAGTACAACATCGACAAGTTGCGCTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGCTCGCACATCCGCACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCGGAGCTAATCGAGCGTGGCTACATATACATCGCTCAGCCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAATACATGACCCAATCGGCCCTTGAAGACGCCAGTCT GCACCTCAGCGAGTCTGCACCGGGTATCTCGGGCACCGCGCTGGAGAAACTGGTTCACGACTTCCGCATGGTCATGAAAACCCTCAAGCGCCTCTCGCGT CTGTACCCACAGGAATTGACCGAGCACTTCGTCTACCTGCCGCCAATCACCCTGGAGCAGCTATCCGACCACGAGGGCATGCAAGCCTGGCTGGCACTGT TCGACGTGCGTCTGCGCACTGGCGAGAAGTCGGGTCTGGTCTACAAAGCCAGCCTGCGCGAAGACCGTGAGCGTAACGTCTGGCTGCCAGAGGTCGAACT GATCTCCCACGGCCTGTCGAATTACATCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTCACGGCCCTGGGCGCGCAGATAAGCACG CTGCTGGAAGAAGGCGCGTACGTGCAACGTGGCGAGCGCAAAAAGCCCGTCACCGAGTTCAAACAAGCCCTCGCCTGGCTGATGGCTGAAAGCACCAAGC GTCATACCATCCAGCGCTACAAAGGACTGGGTGAAATGAACCCGGATCAGCTCTGGGAAACCACTATGGACCCAAGCGTGCGTCGCATGCTCAAAGTCAC TATCGAAGACGCCATTGGCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAACCACGCCGTGACTTCATCGAGAGCAATGCGCTGGCGGTG TCCAACCTGGACTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGACGTGTCGACGGGCAAGTTAATTGTCATGTTCGTGCAGGTTATTGTCATGACAAAAAGCGTCACTACCCCGGCTTAGCGCCGGGGTTTTTCTTTCTG ACTGAGAGATTTAGGGATGGCTGGGCGGCATCTGTGGACTGCATTTTGTAGCGAAGCTACAAGGGATGATCGGAAAATCTCGCTTTGACGAAGGCAAAAA ATTGGGCGACCTAAGGTGTAGCTGATACGAGGCAATTTACGGCAATCAAAACAGCATCGCCCATCAGCCCCTTAAATCACCGCTGATGGGCGGCCCAGTG AGACACGCTTGCGGATTCATTAAAACAAATCGCATGCTGAGCCAGCCAGCCAGCCAGCCAGCCAGCCTGTAGGTGGGAAAAGTTATTTGCCCTTTCGGTC AAAGTTAAGCGCATCGACCAAGGTTAATGGCCCACTGCCCTACCAATAAACCCCGGTTGACCGAAAGGTCTGCCGGGGTTTTGACGTTACAAGGGGATGG
|
|
| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGESDSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKTLKRLSR LYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDVRLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQIST LLEEGAYVQRGERKKPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|