Pseudomonas mendocina NK-01, MDS_4794

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00039	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00039	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	39	50	2.6E-6
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	18	29	2.6E-6
Pfam	PF03466	LysR substrate binding domain	IPR005119	LysR, substrate-binding	87	291	1.1E-28
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	29	39	2.6E-6
Gene3D	G3DSA:3.40.190.290	-	-	-	93	294	4.5E-25
Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	IPR000847	Transcription regulator HTH, LysR	3	62	2.5E-17
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	1	92	8.9E-19
SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	-	-	88	293	5.79E-30
PANTHER	PTHR30427	TRANSCRIPTIONAL ACTIVATOR PROTEIN LYSR	-	-	1	296	2.0E-75
Coils	Coil	Coil	-	-	61	81	-
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	1	110	4.08E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.