Pseudomonas mendocina NK-01, MDS_4721
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CATCTTCCGCAGCAACCAGCTGGCACAAACTCAGCAACAGCAGCGCCATGCCGGCCTGCTCAGCGAACTGCTGGCGTAAAACAGCGCTTCCATTGTCGCT GGTGATTTTTTAGACTATTCAGTCCGCTCGCCCGCTCGGGCCAAGCTTATCCGCACACGTTACGAGGAACACCATGGCTCGCGTTACCGTCGAAGATTGC CTGGACAACGTTGATAACCGCTTCGAACTGGTCATGCTCGCGACCAAGCGTTCGCGCCAGCTGGCCACCGGCGGCAAAGAGCCGAAAGTGGCTTGGGAAA ACGACAAGCCCACCGTGGTGGCCCTGCGCGAAATCGCTGCCGGCCTGGTGGACTATGAAGTCGTCGCCCAGGAAGACATCGTCGAAGAAGAACCGCTGTT CGCTGCCTTCGAGGAAGAGGCCAACGAGCCTCTGTAAGTCGATGATGCCGGGTCGAAGTCGCGCGGCGCAGGGCCACAGCTGCCAACGGGAGAGTCTCCC
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| DNA Sequence for Gene |
>MDS_4721
ATGGCTGGCATAGACGCTCTCGCCGACCGACTTTCGGCCTACCTCGGCCATGACCAGGTCAACCTGGTACGCCGAGCCTACTTCTACGCCGAACAGGCGC ACGATGGCCAACGCCGCCGCAGCGGCGAAGCCTACGTGACCCATCCGCTGGCCGTGGCCAGCATCCTCGCCGACATGCACATGGATCATCAGAGCCTGAT GGCCGCCATGCTGCACGACGTCATCGAAGACACCGGCATCGCCAAGGAAGCGCTCAATGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCGCAGGCCGAGAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATCCGCGTGATTC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACCCTCGATGCCATGCCGCACGAGAAAAGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC CCCCATCGCCAACCGGCTGGGCATGCACAACATGCGCGTGGAGTTCGAAGACCTGGGCTTCAAGGCCATGCACCCGATGCGCTCCGAGCGCATCCGCGCC GCAGTGCGCCGCGCTCGGGGCAACCGCAAGGAAATCGTCGCCAAGATCGAGGAGTCGATCCAGATGTGCCTGCAACGCGAAGGCATGGAAGGCGAAGTGA TCGGCCGCGAGAAGCACCTCTACAGCATCTACCAGAAGATGCGCGGCAAGCGTAAGGCGTTCAACGAGATCATGGACGTCTACGCCTTCCGCATCATCGT CGACAAAGTCGACACCTGCTACCGCGTGCTCGGCGCCGTGCATAACCTGTACAAGCCGCTGCCCGGCCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGCGTGCCCATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAGTCCAACGAAGACGAAGCGCCCAAGGGCAACCACGCTCGCGCGCGTCAGTGGGTCAAGGGCGTACTGGAACTGCA GCAACGCGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGCCGCATCATGGAG CTGCCGAAGGGCTCCACCGCGGTCGACTTCGCCTACGCGGTACACACCGACGTCGGCAACACCTGCATCGCCTGCCGCATCAATCGGCGCCTGGCGCCGC TGTCGCAGGCGCTGGAAAGCGGCTCGACGGTGGAGATCGTCACCGCACCGGGCGCCCGCCCCAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCACGCGCTCAAGCAGCAGCGCCGTTCGGAATCCATCAGCCTTGGCGAACGCCTGCTGAACAAGGTACTGGCCAGCTTCGATACG CACCTGGAGAAGATTGCCCCCGAGCGCGTTCAGGCGGTGCTCGGCGAGTACCGCCAGGAGGTCATCGAGGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTATGTCGTCGCCCGCCGCCTACTGGCCGAGAGCGGCGACGAGACCCTGCCGAGCAGCGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCT GGTGATGAGCTACGCCAAGTGCTGCACTCCGATTCCCGGCGACCCCATCGTCGGCTACCTGTCCGCCGGCAAAGGCATGGTGGTGCACATGGAAAGCTGC CGGAACATCGTCGATATCCGCCACAACCCGGAAAAATGCATCCAGCTCAACTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGCGTCGAAC TGGAGCACCAGCGCGGCCTGATCGCGCTACTGGCCAGCAGCGTCAATGCCGCCGATGGCAACATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTAT CAGCGTCGTGCAGCTGGTGGTCAGCGTGCATGACCGCGTACACCTGGCCCGCGTGATCAAGAAACTGCGCGCGCTCAAGGGCGTGATGCGTATCACCCGA GTACGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACAATTCCCCTATTTCCAGTCTGTAGGCTGGGTGCTCGACCCAGTCAGTTCTCACAAGGAGCGATTCATGAGCAAGACCGTCATCACCAGCGACAAGGC CCCCGCCGCCATCGGCACCTACTCTCAGGCGATCAAGGCCGGCAACACCGTCTACATGTCCGGCCAGATCCCGCTGGATCCGGTGAGCATGGAGCTGGTC GAGGGCTTCGAAGCACAGACCGTGCAGGTGTTCGAGAACCTCAAGGCCGTTGCCGAAGCCGCCGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCT TCCTCACCGACCTCTCGCACTTCGCCAAGGTCAACGAAGTCATGGGCCGTTACTTCGAGCAGCCCTACCCGGCGCGTGCCGCCATCGGCGTGGCCGCTCT GCCGCGCGGCGCGCAGGTAGAAATGGACGCCATCCTGGTCATCGAGTAAGCCCGGCGGCGGGGCTCAGGCCCCGCCTGCTCCCCGTGCGGAGATCATCAT
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| Amino Acid Sequence |
>(p)ppGpp synthetase I
MAGIDALADRLSAYLGHDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALNAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLDAMPHEKSRRIAKETLEIYAPIANRLGMHNMRVEFEDLGFKAMHPMRSERIRA AVRRARGNRKEIVAKIEESIQMCLQREGMEGEVIGREKHLYSIYQKMRGKRKAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNEDEAPKGNHARARQWVKGVLELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNTCIACRINRRLAPLSQALESGSTVEIVTAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLASFDT HLEKIAPERVQAVLGEYRQEVIEDLLEDIGLGNRMAYVVARRLLAESGDETLPSSEGPLAIRGTEGLVMSYAKCCTPIPGDPIVGYLSAGKGMVVHMESC RNIVDIRHNPEKCIQLNWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALKGVMRITR VRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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