Pseudomonas mendocina NK-01, MDS_4257
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGGGTACGTTCGATGCCATCGAGCTGCTTCTGATAACTGGTCAGCTCCTGACGCTGGGCTTCGACCAGATCACGAAGCTGACTGTTATAACCTTTCAA AGCCTCAGCCTGCTGCAGGGCATTTCGGTACTCGGTCAGCATCTCACGACTGGCGTCATCCAGTTGCTCGACACGGCCCTGCGAGGCTTTTGCCTCGGCG GCCAGGCGCTGGCTTTCATCCAGTGCGGCATCCAGCGGCGCAGCAGCCAGCGAGCCGCTGGCCAACATCAAGGCCACAGCCAGGGAACGGAGGGGGAAGC GATTCATGCGCAGAGGGTCCTCGACAGACAGGCTTGCTTCAAAAAGAGAAACATTATCATCTAGAGATGCATTTGAAGCAATGGACAAAACACCGCAGCA GAGCCCGTCGATCTATTGAGCCAGGTCAAAAAGTGGATTGTTGCTTGGCTTAGCATTGATTCCAGCCAAGACACACAACCGACTCGAACTGGAGTTCGCT
|
|
| DNA Sequence for Gene |
>MDS_4257
ATGTACAAGTCACTGTTCACTGCCTCACTGCTGGCCCTGGCCGTCGCCGCCCCCATTGCTCAGGCCCACCAGGCCGGCGACATCCTCATCCGCGCCGGGG CCATCACCGTCAACCCGGAGGCCGACTCCTCCAGCGTCAAGGTCGATCGCGGTGGCCTCGCCGGTGCCAACCTCGGCGGAAAGGCAACCATGAGCAGTGA CACCCAGCTGGGCCTGAACTTCGCCTATATGCTCACCGACAATCTGGGCATCGAGTTGCTGGCGGCAACGCCGTTCGAGCATGATGTGAAGATCAAGGGC ACCGTCCTCGATGCAGCCAATGGCAAGCTGGGTACCCTCAAGCATCTGCCGCCGACTCTGAGCCTTGTGTATTACCCACTAGACGCCAAGTCAGCCTTCC AGCCCTATGTCGGAGCAGGCATCAACTACACCTGGATTTTCGACGAGCACGTCGGCAGCGCCGCCAGCGCCAACGGCTTCGACAACTTCCGCGCCAAGAA CTCCTGGGGCCTGGCCTGGCAGGTGGGTGCCGACTACATGCTGACCGACAGCCTGATGCTCAACGCCCAAGTGCGTTACATCGACATCGACACTACTGCC TATGTCGACAACAATGCCCTCGGTGTTCGCGCGAAGGTCGATGTGGACGTCGACCCCTTCGTCTACATGGTCGGCCTGGGCTACAAGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGCCCTCGCAGAAACGAAAAAGCCGGCGAAAGCCGGCTTTTTCATGTGCCCGATTCACTGTTCGAGCAACTGACGTAACCCTTCACGCAGAGGCGTTTG CGGCGGCATACGGTAATGAGCCTGCAAACGCGTATTGTCGGCACGAGAGTGACGGATGTCGCCAGCTCGTGCAGGCGAGTAGGTGACTTGCGGCAAGCCC GTGCAAAGCGCACCGATCTCCGCCAGCAGCTGATTGAGGCTTACCGCCTGGTTCCAGCCGACATTGACCGGCTGCTCGACGAACTCACCCAGCAGCCCCT GCAGCAGCAGCTCGATCAAATCGCCAATATAGAAAAAATCCCGGGTCTGCTCGCCATCGCCGAAGACGCTGATCGGTAGCCCCCGCTGTGCCCGCTGGGT GAAGATGCTGATCACCCCGGAATAAGGCGAGGATGGATCCTGGCGCGGCCCGAAGACATTGAAGAAACGGAACACCGCCGGCTCCAGCGCATGCTGGCGG
|
|
| Amino Acid Sequence |
>outer membrane protein
MYKSLFTASLLALAVAAPIAQAHQAGDILIRAGAITVNPEADSSSVKVDRGGLAGANLGGKATMSSDTQLGLNFAYMLTDNLGIELLAATPFEHDVKIKG TVLDAANGKLGTLKHLPPTLSLVYYPLDAKSAFQPYVGAGINYTWIFDEHVGSAASANGFDNFRAKNSWGLAWQVGADYMLTDSLMLNAQVRYIDIDTTA YVDNNALGVRAKVDVDVDPFVYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|