Pseudomonas mendocina NK-01, MDS_4034
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGTGTTCCTCTGCCTGGCAGCCCTGTACGAGAGCTGGTCGATCCCGTTCTCGGTGATGCTGGTGGTGCCGCTGGGGATCATCGGCGCGCTGTTGTTCA CCGAGCTGCGCGGGCTGTCCAACGACGTGTTCTTCAAGGTCGGCCTGCTCACCACCATTGGTCTGTCGGCGCGTAACGCGATCCTCATCGTCGAATTCGC CAAGGCGCAATACGAACAGGGCATGACCTTCGCCGAAGCGGCCATCGAAGCCTGCCGCATGCGTCTGCGCCCGATCATCATGACCTCGCTGGCATTTATC CTCGGCTGCCTGCCGCTGGCCATCGCCAGCGGTGCCGGTGCCGGCAGCAAGCACGCCATCGGCACCGGGGTGATCGGCGGCATGCTCAGCGCGATGGTGC TGGCGATCTTCTGGATTCCGCTGTTCTACGTAGTGGTCTGCTCGATATTCGAGAAAAAGCGCCCCGAGCCGATCAGTGAAAACGAGAAGGAGGTACTGCA
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| DNA Sequence for Gene |
>MDS_4034
ATGAAGCAGTCCCTGTTGTCCCTGGCCGTGGCCGCCGCTCTGCTCAGCGGCTGCAGCCTGATTCCCGACTATCAGCGCCCCGAAGCCCCGGTGGCCGCCG ACTGGCCGCAAGGCCAGGCCTATGGCAGCGCCGCCAGCGAGGGCAGCCGCTCCGCAGCAGACCTGCAATGGCGCGAGTTCTTCCGCGACCCGGCGCTGCA GCAGCTGGTGCAGGTAGCGCTGGAGAACAACCGCGACCTGCGCGTCGCCGCGCTGAATGTCGAAGCCTACCGCGCGCTGTACCGCATCCAGCGCGCCGAC CTGCTGCCCTCGGTTTCCGCCGATGGCGCCGGCACCCGCCAGCACCTGCCGGCCGATCTGAACCAGACCGGCGAAGCCCGCACCAGCAGCCAGTACAGCG CGACCCTAGGCGTCAACGCCTGGGAGCTGGACTTTTTTGGCCGTATCCGCAGCCTCAGCGAGCAGGCCCTGCAGCAGTACCTGGCTACCGAACAGGCGCA GCGCAGCACGCAGATCAGCCTGGTGGCCAGCGTCGCCAACGCCTACCTGCAATGGCAGGCAGATCAGGCGCTGCTGCAGCTGACCCAGGACACCCTGAAG ACCTTTGAAGAAAGCTACCAGCTGACCCAACGCAGCTTCGACGTGGGCGTCGCCGACGCCCTGGCCCTGAGCCAGGCGCGCAGCTCGGTGGACAGCGCCC GCGTCAGCCTGGCCCAGTACCAGCGCCTGGTCGCCCAGGATCGCAACGCCCTGACCCAACTGCTGGGCACCGGCGTGCCGGCCGACCTGCCGCAGGGCCT GGCGCTCAATGCCGAACTGCTGGAACAGGTTCCGGCCGGCCTGCCCGCCGACCTGCTGCAGCGTCGCCCCGACCTGCTGCAGGCCGAGTACCAGCTCAAG GCGGCCAACGCCAATATCGGCGCAGCGCGCGCGGCGTTCTTCCCCAGTATCAGCCTGACCGCCAATGCCGGCACCGCCAGCAGCCAACTGTCCGGCCTGT TCGACAGCGGCTCGGGCACCTGGCTGTTCCAGCCGCAGATCAGCCTGCCGATCTTCAACGCCGGCCGCCTGCGCGCCAACCTCGACTATGCCGAGCTGCA AAGCGATATCCGCGTCGCCGAGTATGAGAAAGCCATCCAGGTGGCCTTCCAGGAAGTCGCTGACCGCCTCGCCGCACGCACCACCTATCGCCAACAGCTG GACGCCCAACGCGCCCTGCTGGAGACCACCGAGACCTACTACGACTTGGCCGAGCGCCGCTACCGCACCGGTGTAGACAGCTATCTGACCCTGCTCGATG CCCAGCGCCAGCTGTTCAGCGTGCGCCAGCAGCTGATCACCGACCGCCTGGCCCAGCTCAGCAGCGAAGTCGAGCTGTACAAGGCCCTGGGTGGTGGCTG GAGTGATACGGGGAGCAATGCTCCACAAGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGCGTAACCCGCTTCAAGGACGACCTTACCCAACGCGCCGCCCCCGCAGTCTTTGCGGGGGCGTTTTTTTGTACGAGTTCTGACGGACTGACGCCGC ACCGTAGCCCGGATGAAATCCGGGACCCTGAGGCTTGGCGATAGCTGTATGGCGGCAATTCGGATGTGGCCTGAAGTTCGCTTTCGCGAATGAATTCGCT CCTACAGAAACCTGAAGCCGCATGATTCAGTGGCAGACACCCGAGGCCTCCGAGAACGTTGAAGGCGACTGCTGCGCAGTGCCCTCTCTGTAGGAGCGAA TTCATTCGCGATCCGCTCGCCCCGATTTCGCCCTAAGAGCGCCGTGCCGCCACTCAGGCCAACGCAGCCAGCAGCTGCGCGCAATCCTGCGCATGCAGCT CGGTCAGCTCCGGCCAGGGGTTGTCCGCCAGGTTGACCAGTACGCCGCGCGCGCCCGCAGCCTGGGCGCATTCGAGGTCGAAGCGGTAGTCGCCGACCAT
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| Amino Acid Sequence |
>RND efflux system outer membrane lipoprotein
MKQSLLSLAVAAALLSGCSLIPDYQRPEAPVAADWPQGQAYGSAASEGSRSAADLQWREFFRDPALQQLVQVALENNRDLRVAALNVEAYRALYRIQRAD LLPSVSADGAGTRQHLPADLNQTGEARTSSQYSATLGVNAWELDFFGRIRSLSEQALQQYLATEQAQRSTQISLVASVANAYLQWQADQALLQLTQDTLK TFEESYQLTQRSFDVGVADALALSQARSSVDSARVSLAQYQRLVAQDRNALTQLLGTGVPADLPQGLALNAELLEQVPAGLPADLLQRRPDLLQAEYQLK AANANIGAARAAFFPSISLTANAGTASSQLSGLFDSGSGTWLFQPQISLPIFNAGRLRANLDYAELQSDIRVAEYEKAIQVAFQEVADRLAARTTYRQQL DAQRALLETTETYYDLAERRYRTGVDSYLTLLDAQRQLFSVRQQLITDRLAQLSSEVELYKALGGGWSDTGSNAPQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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