Pseudomonas mendocina NK-01, MDS_3168
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGAGGCCGGGCTGGAGCTGTTCGGCGCGCTCGATTACAGCTGGCGCAGTGGCTACTACGGTGTGCTGGAGCGCGGCACCGGCAGCTACCAGTCGGCTT ACGGCCTGACCGACCTGCGCCTGGGCATCGGCCAGGCCGACCAGCGCTGGGCCGTGGAGCTGTGGGCGCGCAACCTCTTCGACCAGGATTACGCCAGCGC CTTCTACGCCACCCTGGGTTCCGGTGACTACGGCCTGTTGCCGGGTGCGCCGCGCAGCCTTGGAATGACCCTGCGCGCGCGCTACTAAAAAGCATCGGTT CGCCCTCCCGCGCCTTTGCCGCGCCTCTGCAACGCCCTTTCGGCATGCCTTTCGTCGTCATTTCGTCGTGCGTCCGCTGCGGCAAAACTCCTGTCCGGCC ATGCAAAATTGACCGCTTGACGGCGTGCTTAGACTCCGCGGGCTCTTCACTCCCAGCCAATGGCTGGTGAGTGGTTCCCCAATCTTCATGGAGTTGTACG
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| DNA Sequence for Gene |
>MDS_3168
ATGCCAGTTCCTCACAAGGATTCCGTTCGTGCGGGTAAGCATCTGCTGCATTGCGCCATCGTGCTGGCCGGTACCGCTACCGCCCAGCTAGCGCTTGCGC AGGTGCTGCCGGACGCCGGTCAGTTGCTCAACGAGCATCAGCAGACGCGACCTTCGGAGCCGCGTTCCACCCAGCCACCCGCCGCCATCGAGTTGCCCTC CGGCACCAGCGGCCGGCCAACGGACTCCGGCCTGCGCGTGCAGCTCAAGGCCATTCGCTTCAGCGGCGATACCGAACTGGCCGAGGCCGAGAACCTGCAG GAACTGACCAAGCCGGTACTGGGCAAGACCCTGGATCACGCCGGCCTGCAACAACTGGTCGAAAGCCTGACCCGCTACCTGCGCGGTCGCGGTTACGTGC TGGCGCGTGCCTACCTGCCACGCCAGGATCTCACCGACGGGGAACTGGAGATCGCCCTGATCAAGGGTCGCCTGCAATCCGGCACCTCGCGCATCGAAGT GCAGGGCGACACCCGCAGCGCTCCCGAACGCCTGCGCCAGATCGCCGCTGCCGCCTTGCCCGAGGGCAAGGTACTGCACGCCGAAGATCTGGAACGCGCG CTGCTGCTGATCAACGACCAGCCAGGTGTCAGCGCGCAATCCGCGCTGGATGTGGGCACCGAGCCGGGCACCAGCCGCCTGCTGATCAACGCCAAGCGCG GCCCGCTGGTGTCGGGTGGCGTGTCGGCCGACAACTATGGCAACCGCAGCACGGGCACCGCCCGCGCCAATGCCCAGGTCAGCCTGAATGATCCGCTGGG TATCGGCGATCAGTTCAGTCTCGGCCTGAGCAAGAGCACCGGCACCGACATCGTCGGTGCCTCCTACAGCCTGCCGCTGAATGCCTCGGGCCTGCGCCTG AACGCCGCCGGCTCCTACCTGCGTTATGAAGTCGACCAGGAGCAGTTCCGCCCCCTGGATCTGCGCGGCAACGCCCGCAGCGGCTCGCTGGGCCTGAGCT ACCCGCTGATCCGCTCGCGTCTGCAGAACCTCGACCTGTCCGCCACCTACGAGCACAAGACCCTCGAGGACGAGGCACTGGGCACCAACCTGCGTGATCG CGAGCTGAACAATGTGATCCTGGGCATGAGCGGCAACCGCTTCGACTCGCTGGCTGGCGGCGGTGTAACCGAGGCCATGTTGGCGCTGACCTTGGGTGAG CTCGACCTCTCGGGCAACCGCGACGATCAGTTCGCCGACCGCGTCGGTGCCGGCAGCGATGGCAGCTTCCACAAGCTCAACCTGCGCCTGTCGCGCCTGC AGAGCCTGGGCGCTGGCAGTCCCTGGACGCTGTTCGGCGGCCTTTCCGCGCAGTGGTCCGGTGACAACCTCGATTCATCGGAGAAATTCCTGCTCGGTGG CCCGGCCGGTGTGCGTGCCTATCCGGTGGGCGAGGCCTCGGGTGACCAGGGCTGGCTGGCGACGCTGGAGCTGCGCCGCAACATCGATCCGAACCTGCCT GGCGTGGTGCTGCAGGGCCTGGGCTTCGTCGATAGCGGGCGCATCTGGCTGCATCAGGATCCCTGGCCGGGCTCGATCAACAACGCCGGTGACACCAACC GTTACGACCTGCATGCCGTAGGCGTTGGCGCCAACCTGTGGGCCGGCAGCTTCAGCTTGCGTACCGCCGTCGCGCGCACTCTGGACAACAACCCGGGGCG CAGCCTTTCCGGCCTGGATGCCGACAGCCGCTCCAGTGACTGGCGCGCCTGGATCCAGGCCGCGTACGCATTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGCCCATTGCGGCCCTCTACGAATTTTAGGAGCACACCATGAAGCGCGCTTCGTTGAATCATCTTTACCGTCTTGTCTGGAGCGACGCCGACCAGGC GTTCGTTGCCGTTGCAGAACACTCGACCGCACGCGGCAAACGTGGCGGTGTGGTCGGCGTCCTCGCTGCCGTCAGCCTGCTCGGCAGCGGCGCCGTACTG GCGGCCGACCTGCCCACGGGCGCAAGCGTAGTCGGTGGTAGCGGCAACATCTCGCAGAACGGCAGCCATATGGTGGTCGATCAGCACACAGGCAAGCTGG TCACCAACTGGAACAGTTTCGATATCGGCGCCGATGCCAGCGTGACCTTCCACCAGCCCGGTGCCAACAGCATCGCGCTGAACCGGGTGATCGGCGGCGG CAATGCCAGCCAGATTCTCGGCAAGCTCGACGCCAACGGCCAGGTGTGGCTGCTCAACCCGAACGGCGTGGTGATCGGCAAGGGTGCCGAGGTCAACGTG
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| Amino Acid Sequence |
>polypeptide-transport-associated domain-containing protein
MPVPHKDSVRAGKHLLHCAIVLAGTATAQLALAQVLPDAGQLLNEHQQTRPSEPRSTQPPAAIELPSGTSGRPTDSGLRVQLKAIRFSGDTELAEAENLQ ELTKPVLGKTLDHAGLQQLVESLTRYLRGRGYVLARAYLPRQDLTDGELEIALIKGRLQSGTSRIEVQGDTRSAPERLRQIAAAALPEGKVLHAEDLERA LLLINDQPGVSAQSALDVGTEPGTSRLLINAKRGPLVSGGVSADNYGNRSTGTARANAQVSLNDPLGIGDQFSLGLSKSTGTDIVGASYSLPLNASGLRL NAAGSYLRYEVDQEQFRPLDLRGNARSGSLGLSYPLIRSRLQNLDLSATYEHKTLEDEALGTNLRDRELNNVILGMSGNRFDSLAGGGVTEAMLALTLGE LDLSGNRDDQFADRVGAGSDGSFHKLNLRLSRLQSLGAGSPWTLFGGLSAQWSGDNLDSSEKFLLGGPAGVRAYPVGEASGDQGWLATLELRRNIDPNLP GVVLQGLGFVDSGRIWLHQDPWPGSINNAGDTNRYDLHAVGVGANLWAGSFSLRTAVARTLDNNPGRSLSGLDADSRSSDWRAWIQAAYAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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