Pseudomonas mendocina NK-01, MDS_3038
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 217 | 386 | 6.2E-50 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 195 | 385 | 3.5E-60 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 210 | 386 | 1.3E-54 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 227 | 385 | 1.73E-45 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 222 | 383 | 3.9E-48 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 221 | 385 | 3.5E-46 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 215 | 385 | 4.3E-55 |
| Coils | Coil | Coil | - | - | 315 | 335 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 223 | 385 | 1.39393E-58 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.