Pseudomonas mendocina NK-01, MDS_2413

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mendocina NK-01 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
TACGCGAAGCGCTGAGCAGCACCAACAAGGTGGCCCTGGCTCATGTGGTGCTGCACACCCGCCAGCACCTGGCGGCGCTGATGCCGATCGACTCGGCAAT GGTGCTGGTAATCCTGCGCTGGCCGAGCGAAGTGCGTGGACTGGACACACTGGAACTGGATGATTCGGTAACCAAGCCCAAGCTGGCCAAAAGCGAGCTG GACATGGCCAAGCGCCTGATCAAGGACATGAGCGCCGACTGGCAGCCTGAGGAGTATCAGGACAGCTTCCAGGACCGCATCATGGCGCTGGTGGAGAAGA AGGCCAAGGCCGGCAAGATCGAGAACGTCGAGCAGGTCGAGGGCGAAGAGACCCGGCGCAGTGCCGACGTCATCGACCTCACCGAACTGCTCAAGCGCAG CCTGGGCGGCAAACCCGACAGCAAGACGAAAGCCAAGCCCAAGGCCAGCACGCCACGCAAGAGCCCCAAGACTGCACGCAAATAAGCCGGGATACCGACC
DNA Sequence for Gene
>MDS_2413
ATGGCCAGAGCGCAGAGCGAATACAACCGCAAACGCAATTTCGAGCAGACCAGCGAACCCCGCGAACAACCGCGCAAGCGCCGCAGCAAGGCCGGTGCAT TGCGTTTCGTGGTGCAGAAGCACGATGCGCGCCGCCTGCACTACGACTTTCGCCTGGAACTGGACGGCACTCTGAAGAGCTGGGCGGTGCCCAAGGGGCC GAGCCTGGACCCGACGCAAAAGCGCCTGGCGGTGCACGTCGAGGATCACCCGCTGGATTACGCCAGCTTCGAGGGCAGCATCGCCGAAGGCAACTATGGC GCCGGCGATGTGATCGTCTGGGACCATGGCATCTGGCAGCCGCAGGGCGACCCGGCGGGTGCCTACCAGGCCGGCAAGCTCAAGTTCACTCTGGTGGGCG AGAAACTGTCCGGGGACTGGACGCTGGTGCGCACTCGTCTGCGCGGCAGTGGCGACAAGGAGCAGTGGCTACTGATCAAGGAGCGCGACGACATCGCGCG CCCCAGCGACGAGTACGACATCGTCGAGGCACAGCCACAAAGCGTGATCAGCGGCGCGCTGGTGGGAGGCCCAAGCAAGGAGGCCAAGCGCAAGGAATCG ACGAAACCGGCAAAAAGTCGCAAGGCCCAGACGGAGTTCCCCGACAGCCTTGCGCCGCAACTGGCGACCCTGGCCGAGCGTCCGCCCGAAGGCGACTGGC TGTATGAGGTGAAGTTCGACGGTTACCGCATCCTGGCGCGGATGCGCGGCGATGAGGTGCGTCTGCTCACCCGCAATGGCCATGACTGGACGGAGCGCCT GCCGCAACAGGCCACGGCTCTGGCCAAGCTGGGCCTGAGCGACAGCTGGCTGGACGGAGAGGTCGTGGCGCTCAATGAGCAAGGCCTGCCGGACTTCCAG CAACTGCAGAATGCCTTCGATATCGGCCGCAGCCACGATCTCATCTACTACCTGTTCGATGCGCCGTTTCTCAACGGCGAAGACATGCGCGAGGTGCCCC TGGAGACTCGGCGCGGCAAACTCAAGACTGCATTGGGCAGCACGCGGCGCAGCCCGCTGCGTTTTTCGGAGGCTTTTACCGCCCATCACAGGGACATCGT CGAGAGCGCCTGCGCCATGTCGCTGGAAGGCGTCATCGGCAAGCGCTCGGGCAGCCTTTACGTGTCGCGCCGCAGCGCGGACTGGATCAAGCTCAAATGC CGTCTGCGCCAGGAGTTCGTCATCGTCGGCTACACTAAGCCGCAGGGCAGTCGCAGCGGCTTTGGCGCGCTGCTGTTGGCGGTGAACGAGGCGGGCGGGC TGCGCTATGCCGGGCGGGTCGGCACCGGCTTCGGGGAAGCCTCGCTCAAGGCCCTGCATGAGCAGTTGCGCAAGCTGGGGCGAGACGAGTCGCCACTCGA GCGGAAACTGACCGCTGCCCTGGCCCGCGGTGTGAGCTGGGTTGAGCCGCAACTGGTCGGCGAGGTCGAGTTCGCCGAATGGACGCGTGAAGGCATCGTG CGCCAGGCCAGCTTCATCGCCTTGCGCAGTGACAAGCCGACGGCGCAGATCGTTCGTGAGCATCCGCGTGCGCCAGGCGCTGCAGCGAAGAAACAGACCA AGAAGGCCGAAAGCTCGTGCAAGTCATCCGCCAAGCCGGTGGTGGCCGGGGTGCCGATCAGCAATCCGCAGCGGGTGATCGACCCGGAAAGCGGCACCAC GAAACTGCAGCTCGCTCAGTTCTACGCGGATATCGCCGAATGGTTGCTACCGTACCTGCGCAAACGGCCGGTCTCGCTGGTGCGGGCGCCGGACGGGGTA GAGGGGGAACAATTCTTCCAGAAGCATGCCGAGCGCCTGGCAATCCCCAACATCAAGCATCTCGATCCCAAGCTGGATCCCGGCCACGCGCGCCTCATGG AAATCGACAGTGTGCCAGCCCTGGTCGGTGCAGCGCAGATGGGCTGCATCGAGTTCCACCGCTGGGGCGCTACCAGCGACCGCATCGAAACGCCCGATCA TTTCGTGCTCGATCTCGACCCGGACCCGGCGCTGCCGTGGCGCAGCATGCTGGAGGCGACCCGGCTGACCCTGAGCGTGCTCGACGAACTGGGTCTGCAG GCATTTCTCAAGACCAGCGGTGGCAAAGGCATGCACATCATCGTGCCGCTTGCCCGGCACGCCGGCTGGGATACGGTCAAGGGCTTCGCCAAGGCCCTGG CGCAGTTCATGGCCAGGCAGCTACCCGAGCGATTCACCGCGACGTCGGGGCCGAAGAATCGGGTGGGGAAAATCTTCATCGACTATCTGCGCAACGGCCG TGGCGCCAGTACGGTGTCGGCCTACTCGGTGCGCGCGCGGCCAGGCCTGCCGGTTTCGGTACCGATCGCCCGGGACGAACTGGACGGCCTGCGCAGCGCC CAGCAATGGACGGTCGCCAATCTGCAGCGACGCCTGGACGGGCTGCGCCAGGACCCCTGGGCCGGCTATGCCAACCGCCAGCGCCTGACCCGCGCGATGT GGGACCGGCTCGGCGCCGAAGCACCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTGGCGGATCAGATGAGCAGCAGGAGCAGCAATACCGCGCAGGTTCCCAGCAGGGCGGTCACTCGCGTCGAACTCAGGGCCAGGGCGTGCCCACGTGACC TGCGGGTAAAGCGTCCTTGCACCTCGTGCAGGCCATCGACACTGTGAAAGAGGTTGTCGCCTGCTGGTTCTGGCTCGCCCTCGCTCAACTGGCCTTGCCA TGCACGCCGCGCCAGGAGCCGGTCGAGCAGGCCCGGAAAGAATTGATTGCCAATGATGGCCTTGAGGGTGGGCAGGCCGACCCAGAGTTCCCGTGGCGGT GCACTCGCGACGCTGAGAATGGCGCGCGCTGCGACGCCGGGGTCATGAATGGGCGGCACGGGTTGCACGCGTTGCCCCAGCTTGTTGCGCGCCCAGTCGA ACTGCGGGGTATTGATCGCCGGCAGCTGCACCATGCAGACCTTGACCTCGCTGCGCTGGTGAATGAGCTCGCAGCGTAGCGAGTCGGTGAAGCCGCGCAG
Amino Acid Sequence
>ATP-dependent DNA ligase
MARAQSEYNRKRNFEQTSEPREQPRKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKSWAVPKGPSLDPTQKRLAVHVEDHPLDYASFEGSIAEGNYG AGDVIVWDHGIWQPQGDPAGAYQAGKLKFTLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQSVISGALVGGPSKEAKRKES TKPAKSRKAQTEFPDSLAPQLATLAERPPEGDWLYEVKFDGYRILARMRGDEVRLLTRNGHDWTERLPQQATALAKLGLSDSWLDGEVVALNEQGLPDFQ QLQNAFDIGRSHDLIYYLFDAPFLNGEDMREVPLETRRGKLKTALGSTRRSPLRFSEAFTAHHRDIVESACAMSLEGVIGKRSGSLYVSRRSADWIKLKC RLRQEFVIVGYTKPQGSRSGFGALLLAVNEAGGLRYAGRVGTGFGEASLKALHEQLRKLGRDESPLERKLTAALARGVSWVEPQLVGEVEFAEWTREGIV RQASFIALRSDKPTAQIVREHPRAPGAAAKKQTKKAESSCKSSAKPVVAGVPISNPQRVIDPESGTTKLQLAQFYADIAEWLLPYLRKRPVSLVRAPDGV EGEQFFQKHAERLAIPNIKHLDPKLDPGHARLMEIDSVPALVGAAQMGCIEFHRWGATSDRIETPDHFVLDLDPDPALPWRSMLEATRLTLSVLDELGLQ AFLKTSGGKGMHIIVPLARHAGWDTVKGFAKALAQFMARQLPERFTATSGPKNRVGKIFIDYLRNGRGASTVSAYSVRARPGLPVSVPIARDELDGLRSA QQWTVANLQRRLDGLRQDPWAGYANRQRLTRAMWDRLGAEAP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site