Pseudomonas mendocina NK-01, MDS_2342

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0015562	efflux transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil	Coil	-	-	68	102	-
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	292	475	7.4E-29
NCBIfam	TIGR01845	JCVI: efflux transporter outer membrane subunit	IPR010131	RND efflux system, outer membrane lipoprotein, NodT	14	477	0.0
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	68	268	2.2E-28
Gene3D	G3DSA:2.20.200.10	Outer membrane efflux proteins (OEP)	-	-	105	366	7.4E-130
PANTHER	PTHR30203	OUTER MEMBRANE CATION EFFLUX PROTEIN	-	-	9	479	1.2E-97
SUPERFAMILY	SSF56954	Outer membrane efflux proteins (OEP)	-	-	5	479	1.27E-115
Coils	Coil	Coil	-	-	242	262	-
Gene3D	G3DSA:1.20.1600.10	Outer membrane efflux proteins (OEP)	-	-	58	477	7.4E-130

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.