Pseudomonas mendocina NK-01, MDS_2126
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk00910 | Nitrogen metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 113 | 386 | 1.4E-116 |
| CDD | cd13553 | PBP2_NrtA_CpmA_like | IPR044527 | Nitrate/bicarbonate ABC transporter substrate-binding domain | 25 | 251 | 1.9116E-76 |
| PANTHER | PTHR30024 | ALIPHATIC SULFONATES-BINDING PROTEIN-RELATED | - | - | 15 | 358 | 1.1E-43 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 26 | 377 | 1.4E-116 |
| Pfam | PF13379 | NMT1-like family | - | - | 20 | 270 | 1.4E-91 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 23 | 258 | 1.81E-27 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.