Pseudomonas mendocina NK-01, MDS_1961
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTGAAAGAAGGCGACGAAGTAGAAGCCAAGATCATCAGCGTCGACCGCAAGTCCCGCGTTATCAGCCTGTCCATCAAGTCGAAAGACGTCGAGGACGA GAAGGACGCGATGAAGGAACTGCGTAACAAGCAAGACGTTGAAAGCACCGGTCCGACCACTATTGGTGATCTGATCCGTGCTCAGATGGAAAACCAGAAC TAAGTTCGGGTAATTCATCGCACGAAAAGGCGGCCTTCGGGTCGCCTTTTTTGTTTCTTGGCTCCGCTGTTGGACGCTTGATGCCTCTCGGTCTGTGCGT CGCTAAATGTACTTTCCTCTTCTCTCGTCGCTAAATATCGACTCGGTATTTGCCTTGTGGCGGTGCTAATGAAATCGCTATATGGTCGATTGTTCCCAGC GTTGCGCTAACGCCTTGTTTTTTAGGCTGTTCAAAAGCTGATCAGCGTGCTAAAACCAAACCGTCGAGTCTTCTAGCCGCTTGAAAAAGAAGGGAAAACC
|
|
| DNA Sequence for Gene |
>MDS_1961
ATGACCAAGTCGGAGTTGATCGAAAGAATTGTCACTCACCAAGGTCAGCTGTCCTCCAAGGATGTCGAGCTGGCCATCAAGACCATGTTGGAACAAATGT CCCAGGCGTTGGCTACGGGGGACCGAATCGAGATCCGCGGTTTTGGCAGCTTCTCGCTTCACTATCGTGCTCCGCGAGTAGGGCGCAACCCCAAGACCGG CCAGTCGGTGCGCCTGGATGGCAAGTTTGTGCCGCACTTCAAGCCCGGCAAGGAGCTGCGTGATCGAGTCAATGAGGACGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGTGCGTGACTTAATTGCAGATCAGGCGGTCGACCGGCGTCACACTTTTGTCGCGCTTGCGAAATTGTAGAAAACCGGCAAAATGTGCGGGTTTTCACA GGTTCCTTCCTTGCCAGCTTTCTAAGCTAGCTGATTCAGTTGATTGCGATTTCCTGAGCTGTTACCCGCACTACTGGGCTGAGTCCCTTTAGATTTGCCA GTGTTAAAGGATTGACTCGTGCGGTACCCCTCCATTGTTCATCACGGCGCCGTAACTGGTGTAACGGGCTCATGTCATCAGTTGCAGATGAGTCAGGAGC ATGCGCTGCTGGTTGACTGCGGCCTTTTTCAAGGTGCCGAAACCTCCCCTGAAGGTCGAGCAGGCACTGGCAACCTCGCAATAGATTTCCCTTTAGACAC TATCAAGGCTCTGGTCGCCACCCATGTCCATATCGACCACGTTGGCCGCATCCCATACTTGCTAGCGGCAGGCTTCAGTGGGCCGGTTCTCTGCAGCGAG
|
|
| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVRLDGKFVPHFKPGKELRDRVNEDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|