Pseudomonas mendocina NK-01, MDS_1956
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGAACATCGGCCCGAGCGGCCTGGTGGTGGTGATCGTGCGTGAAGACCTGCTCGGCCGCGCTCGCAGCGCTTGCCCGACCATGCTCGATTACAAGATC TCCGCCGATAACGGTTCGATGTACAACACCCCGGCGACCTATTCCTGGTACCTCTCCGGCCTGGTCTTCCAGTGGCTGAAGGAGCAGGGTGGCGTCGAAG CGATGGAGCGTATCAACCGCGCCAAGAAGGACTTGCTGTACAAGGCCATCGACGGCAGCGACTTCTACAGCAACCCCATCGCCCACAACGCGCGCTCCTG GATGAACGTGCCGTTCCGCCTGGCCGATGAGAAATTGGACAAGGCTTTCCTGGCCGGTGCCGATGAGCGCGGCCTGCTCAACCTCAAGGGCCATCGCTCG GTAGGTGGCATGCGTGCCTCCATCTACAACGCCGTCGGTCTGGATGCGGTCGAGGCGCTGGTGGCCTACATGGCCGAGTTCGAGAGGGAGCACGCCTGAT
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| DNA Sequence for Gene |
>MDS_1956
ATGTCCGAGCAGGAACTGCAAGCGCTGCGCGTACGCATCGACAACCTCGACGAGCGCATTCTCGAGCTGATCAGCGACCGCGCGCGCTGCGCCGAAGAAG TCGCCCGTGTGAAGATGAAGGAGCTGAAGGAAGGCGAATCGCCGGTCTTCTACCGCCCCGAACGCGAGGCTCAGGTGCTCAAGCGCGTGATGGAGCGCAA TCAGGGGCCGCTCGGTAACGAGGAAATGGCGCGGCTGTTCCGTGAAATCATGTCCTCCTGCCTGGCTCTGGAAAACCCGCTTAAAGTCGCTTATCTAGGC CCGGAAGGCACGTTCAGCCAGGCGGCGGCGATGAAGCACTTTGGTCACGCGGTGATCAGCGTGCCGATGGCTGCCATCGACGAAGTATTCCGCGAAGTGG CGGCCGGTGCGGTGAATTTCGGTGTGGTGCCGGTGGAGAACTCCACCGAGGGCGCGATCAACCACACGCTGGACAGCTTCCTCGAGCACGATATGGTCAT CTGCGGTGAGGTGGAACTGCGTATTCACCATCACCTGCTGGTGGGCGAAACCACTCAGACCGACAAGATTACCCGCATATACTCCCATGCCCAGTCGCTG GCGCAGTGCCGCAAATGGCTGGACGCGCACTACCCGAACGTCGAGCGCGTGGCGGTTTCCAGCAATGCCGATGCGGCCAAGCGAGTGAAGAGCGAGTGGA ACAGTGCGGCCATCGCCGGTGACATGGCGGCCAATCTGTATGGCCTGACCAAGCTGGCTGAGAAGATCGAGGATCGCCCGGACAACTCCACGCGCTTTCT CATCATCGGCAGCCAGGAAGTGCCGCCGACGGGCGATGACAAGACCTCGATCATCGTCTCCATGCGCAACAAGCCGGGCGCGCTGCATGAGTTGCTGGTG CCGTTCCACAACAACGGCATCGACCTGACTCGCATCGAAACCCGTCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCATTGGCCATC ACCGCGATCCGCTGATCAAGGATGTGCTGGAGAAGCTCGCGCAAGAAGCAGTGGCGCTCAAGGTGCTGGGTTCCTATCCCAAGGCGGTGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCCGCGTCCTTGTAGGAGCGGCTTTAGCCGCGATATTCGTAACTGAATTCGCTCCTATGAAGCCTGTGGCGCTCGGTCGAGACAATGAGGTTTTGTGAT GAGTTGCGATTTCCTGACCCTGGCCCAGCCAGGGGTGCAAAAGCTGTCCCCCTACGTACCTGGCAAGCCGGTCGACGAGCTGGCCCGTGAGCTGAGTCTC GACCCGGCGGGTATCGTCAAGCTGGCCAGCAATGAGAACCCACTCGGCCCCAGCGACAAGGTGCTGGCGGCGATTCGTGCCGAGCTGGACGAGCTGACCC GCTACCCGGACGGCAACGGCTTCACCCTCAAGGCTGCGCTGGCCTCACGCTATGGCGTGGATGCGGCGCAGGTCACCCTGGGCAACGGCTCCAACGATAT CCTCGAGTTGGTTGCCCGAGCCTATCTGGCACCCGGCCTCAATGCCGTGTTCAGTGACTACGCCTTCGCTGTTTACCCTATCGCCACTCAGGCTGTGGGC
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| Amino Acid Sequence |
>prephenate dehydratase
MSEQELQALRVRIDNLDERILELISDRARCAEEVARVKMKELKEGESPVFYRPEREAQVLKRVMERNQGPLGNEEMARLFREIMSSCLALENPLKVAYLG PEGTFSQAAAMKHFGHAVISVPMAAIDEVFREVAAGAVNFGVVPVENSTEGAINHTLDSFLEHDMVICGEVELRIHHHLLVGETTQTDKITRIYSHAQSL AQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAANLYGLTKLAEKIEDRPDNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLV PFHNNGIDLTRIETRPSRSGKWTYVFFIDFIGHHRDPLIKDVLEKLAQEAVALKVLGSYPKAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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