Pseudomonas mendocina NK-01, MDS_1739

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0009276	Gram-negative-bacterium-type cell wall	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF015761	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0015628	protein secretion by the type II secretion system	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF015761	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0015627	type II protein secretion system complex	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF015761	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pmk03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF12693	GspL periplasmic domain	IPR025691	GspL periplasmic domain	225	378	5.0E-36
SUPERFAMILY	SSF53067	Actin-like ATPase domain	IPR043129	ATPase, nucleotide binding domain	1	135	1.94E-19
PIRSF	PIRSF015761	Protein_L	IPR007812	Type II secretion system protein GspL	6	379	3.4E-50
Gene3D	G3DSA:3.30.1360.100	General secretion pathway protein M, EpsM	-	-	292	379	6.0E-19
Pfam	PF05134	Type II secretion system (T2SS), protein L	IPR024230	GspL, cytoplasmic actin-ATPase-like domain	36	219	1.1E-29
Gene3D	G3DSA:3.30.420.380	-	-	-	4	159	1.3E-22
NCBIfam	TIGR01709	JCVI: type II secretion system protein GspL	IPR007812	Type II secretion system protein GspL	6	373	5.0E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.