Pseudomonas mendocina NK-01, MDS_1579

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006783 heme biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00154
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008495 protoheme IX farnesyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00154
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00154
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc heme <i>a</i> biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. IPR006369 Protohaem IX farnesyltransferase 4 286 18.017405
Pfam PF01040 UbiA prenyltransferase family IPR000537 UbiA prenyltransferase family 21 269 1.1E-57
CDD cd13957 PT_UbiA_Cox10 IPR006369 Protohaem IX farnesyltransferase 9 280 4.95281E-109
FunFam G3DSA:1.10.357.140:FF:000001 Protoheme IX farnesyltransferase - - 12 166 1.0E-59
NCBIfam TIGR01473 JCVI: heme o synthase IPR006369 Protohaem IX farnesyltransferase 6 284 1.6E-89
Gene3D G3DSA:1.10.357.140 UbiA prenyltransferase IPR044878 UbiA prenyltransferase superfamily 16 167 7.6E-32
PANTHER PTHR43448 PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL IPR006369 Protohaem IX farnesyltransferase 4 284 1.2E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.