Pseudomonas mendocina NK-01, MDS_1046

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mendocina NK-01 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
TGAGTGAAACTGTTGCGCCCAACCTGATCTTGACACTCGACGACTCGGGCAGTATGCGGTGGGCATTCGTACCAGACAATATCAACGGCGAGTTCGACAG CCGCCGGGGCAAGTCTGCCGACTTCAACCCAATGTACTACAACCCCAATGTCACCTATCGGATACCGACCCGCTACGACATCAACGGCAACGTATCGTCG ACACCCTACAGCACCAGTTTTACTCAGGCCTACAATCATGGATTCGTTCAGAGCCGTGGGAACTTTAACTTGAGTAACAGCTACCGGGTCACCTGGAGCT ACGACCCGCGCACCACGTTAGCGACCAACACAGCGTACGGCTACAGCAGCACTAACAACCGTTTTGCCCGAAACCCGGCGACCGATTTCTCTGCAAGCGT TGTCAGAACAACCAACGGTACTTCGACGTTTACCACACCAGCCGGCATCGTTTTTTCAATAACCCGGACGGGCAGCAATAGCTGCACTGCCACCGCGACG
DNA Sequence for Gene
>MDS_1046
ATGGCAGGTGTTTTCAACAACCTCGCGGCTAACTGTACCCGGACAGCTACCAATACCTACCAGGGCTCCCTGACCGAGCTCGCCGTACCTGCCTACTACT ATCATCTGGACAGAACACTTGCTGGTTGCGCCAATGCAGCAAGCAATAACGAAAGCTGCCAGAAACTCGTTTTTGTCAGTAGTACCTCTGGGAAAGTCAG GTCGGACGATGCCACTTCGGGCACCGATGAACGACAGAACTTCGCAATCTGGTATTCGTTCTACCGAAACCGTGCACTGGCCACCCTCAGCGCGGCACAG ATCGCTTTTGCCGATCTGCCGCCCGAAGTGCGCTTGACCTGGCAGAGCCTGGGCACCTGCACCAGCTTCACCGGCAATGACACAGGCAATTGCTACGACA ACCGTCTGCGCGAATACAACAATGCGCACAAGGGTCAACTGTTCGGCTGGCTGCAGGATCCCCCCTTCAGCCAGAGTACCTACCTGCGCCAAGCGATGCG CCGCGCCGGTGAGTTCCTGAAAACCAACGTCGCATGGCAGAAATACCCCAACGACAGCAGCCAAACCAACAACGCTGGCAACACCTACGCCTGCCGCCCC AGCTATCACATCATGATGACTGACGGGATCTGGAACGACGGTTTCAGCAGTCCCAGCGATACTTTCCGCTCGGACAACGCCAGTTTCACCCTGCCGAACG GCACCACGTACAACGGCAGCCGCGCACCTTATGCCGACAGTACTCAGCAGACTGTTGCGGATTTGGCAATGCACTACTGGGCCACCGACCTAAACACCAA TCTGAGCAATGACCTGCGTCCGTACCTGCCATTTCGCAACGATAACGACCTGACAGCTCAGTTCTGGGATCCCCGCAACAACCCGGCAACCTGGCAGCAC ATGGTCAACTTCACCATGGGCTTGGGCCTGACCAGCTCGCTCAATCAGGCCAACATCCCGTGGGATCCGGCCCAGGGTACCTTCGGCGGCACCGGCTACA ATAACTTGCGCAACGGCACGGTAAACTGGCCCGCGGCAGGTACTGACAGCGTCAACAACGTCTATGACCTGTGGCACGCGGCGATCAACTCCCGCGGCGA GTTCTTCAGCGTCGACAGTCCCGATGCGATGGTTCAGGCGTTCCGTGACATCCTCAACCGTATCGCCGACAGGACGTCGACGGCTGCACGCCCAGCGGTT TCCGCTTCATTCGTCTCAGACAATGATGGCAGCGCCATCCAAAGCAATGTTTACGCGACCCAGTTCAACAGCACTGACTGGAGCGGGCAGATTTTCAAGA GCCTGCTCAGTGCCGACGGGCAAGTTACGGAACTCTGGAATATCCAGTCGGCTAACGTGGGTATCAACCCCAACAGTCGCCGCGTGCTGATGGCGGACGC CAGCAACAAGACCAATGGCTTCAAGGATTTCAACTGGACCAACCTGGGAACGATGCAGGATCTACTCAACATCAACCCGGAAAGTCTTGTTGGTGCACGA GATTCGCGTGGCCAGAATCGCGTCGCCTATATCCGTGGAGATCGAAGTGGTGAGGGTGATAACAGCCCGGCGTTTCGCAAACGCAATAGCCGTACCGTCA TAGGCGACATCGTCAACTCGAGCCCAGTGGTTGTCGGTACTCCCGGTTATCTGGCCTATCTGGCCGATGCGATCGAGAACCCCACCGGAACTCGTACCAG CTACAAGGGGTACGCCGCCTTCCGCGAAGCCAACAAAAAGGGCAGCCGCAAGGAAATGGTTTATGTCGGAGGTAACGACGGCATGCTCCATGGTTTCAAC GCCAGCACCGGTGCCGAGGAGTTCGCCTTCATCCCAACCGAAGTAATTAAGAATCTCTACCGCCTCACTGGTCAGAACTACAGTGGCGCGGAGCACCGTT ATTTTGTCGACGGCACACCAATCGTACGTGATGTCTACATGGGCGATGATACCGGCTGGCGTACGGTGCTTATCGGCACACTGCGCGCGGGAGGCCGTTC CCTTTTCGCACTGGATATCACCGATCCATCCCAGATCAAACTGCTTTGGGAGTTCGGCACCGCCAAGGATGCAGACTTAGGCTATACCTTCGCCCAACCT GAAATCGTGCGGCTGCACACAGGCGAATGGGCAGTTCTGCAAGGCAATGGCTATGACAGCGTCAATGACAAGGCAGCCTTACTGATCATTGATATCAAAA CAGGGGATCTGATCAAGAAAATCACCGTACCCGATACCGTCGAGAACAACGTCACTCTGGCAAATGGTCTGTCAAGCGTACGCGGAGCTGACAATAACGG CGATGGCTTGGTGGACTACGCCTATGCCGGTGACCTGCTGGGCAATCTGTGGCGCTTCGACTTGGTCAAGTCGTCCCCCAGCTCGGATACACCGGTAGCG GTCGATCCATTCGCCCGAACCAACACTGAAGTTTCCAGTACTACCAAGAGCGACTTCAAACTGGCCTATGGTAACCGGCCCTTATTCGTCGCCAAGGACA AGGCCGGCAAACGCCAACCTATTACCATCCAACCGTCGCTCGTACGCCATCCGACCGGCTATGGCTACCTAGTATTGATAGGGACCGGGAAGTACTTCGA AGCCAGCGACGCTAATGTTGACACAAGTAGAGCCATGACCCTCTACGGCATTTGGGACCGCAAAACCAAGCGGCAGAAAACCGACATCAATACGGTGCTT GCCGGTAGTCGCTTCACATCGGGAACTACACCTGGACGCCTGAAAGAGCAGAGCTTCATCGAGCAACAAGACAATGCCGTGATTGGCGACGATGTTCAGA GTGCCAATCGCGATATCAAGCTACTGAGCAACGGTATTCCTCAGTGGTACCGGACACCCGCTCCCAATGAAACGCTGAGCATTCCGAACGACGATGGTGC AGTCAATCAGTGGGGCTGGGCATTGGACATGGCAGTTACCGATACGTCTGGTACAGCACGCCTGGAAGGCGAGATGATCATCAACAACATGACCGCCAGC GGCTCGATCCTGTTCCTCAGCAGCCTCACGCCGAACCAAGACCCCTGCCAGGCAGGCGCGGACACCTGGCTCTATGGCGTAGACGCCCATACGGGTGGCC GCACACGTTTCAACGTTCTGGATCTGAATGCAGATCGTATAGTCAACTCGACCGATGAGTACGATGCAAAAGTCGTATCCGGCATGCGCTTCCCTGCTCT CGGCGGTTTCACCCTAGCGCCGGGTAACAAGGTGTTCGGCAGTGACGGGGCGTCAAACCCCTTCACCGTGGGTGATGACCCCAACAGCAGCGGCCGTCAG AGCTGGCATATTGTACCCGAGGATTTCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTAGGTATAAACAGAAAGGCTTTAGTCTGATCGAACTGATGCTCGCCGTAGCGATCATCGGCATTCTTGCGGCCATCGCAATACCGAACTACCAAGATTA CATCACCCGCAGCAAAAGAGCGGAGGGCATGGCGTTGCTGCAAGAAATGGCCGCGCGACAGGAGCGTTTCTATGCCCAGAACAATCGTTATGTCACCACC CCTCAGGATCTGGAGCTACTGGTTTCCGACCAGACCAACGTGACCAACATCAACACAGCCAATGCCAAAATACGTTCGGAAAACGGCTACTATCTGGTGA GTGTTTCGCGCAGCAACGGCGATGGTGGCTATACGCTGACGGCAGAGCAGCAGATCGGTGACGGACTCTGTGGCAACCTGACTCTAACCGCGGTCGGAAT AAAGAACCGAATAGCCAGCGGCTCGAATATCAAGACCGTCGAGCAATGCTGGCGCTGAGCAGTTAGCCGGTCCAAAGAAAAAGGCGATTCAAAGATCGCC
Amino Acid Sequence
>putative type IV fimbrial biogenesis protein PilY1
MAGVFNNLAANCTRTATNTYQGSLTELAVPAYYYHLDRTLAGCANAASNNESCQKLVFVSSTSGKVRSDDATSGTDERQNFAIWYSFYRNRALATLSAAQ IAFADLPPEVRLTWQSLGTCTSFTGNDTGNCYDNRLREYNNAHKGQLFGWLQDPPFSQSTYLRQAMRRAGEFLKTNVAWQKYPNDSSQTNNAGNTYACRP SYHIMMTDGIWNDGFSSPSDTFRSDNASFTLPNGTTYNGSRAPYADSTQQTVADLAMHYWATDLNTNLSNDLRPYLPFRNDNDLTAQFWDPRNNPATWQH MVNFTMGLGLTSSLNQANIPWDPAQGTFGGTGYNNLRNGTVNWPAAGTDSVNNVYDLWHAAINSRGEFFSVDSPDAMVQAFRDILNRIADRTSTAARPAV SASFVSDNDGSAIQSNVYATQFNSTDWSGQIFKSLLSADGQVTELWNIQSANVGINPNSRRVLMADASNKTNGFKDFNWTNLGTMQDLLNINPESLVGAR DSRGQNRVAYIRGDRSGEGDNSPAFRKRNSRTVIGDIVNSSPVVVGTPGYLAYLADAIENPTGTRTSYKGYAAFREANKKGSRKEMVYVGGNDGMLHGFN ASTGAEEFAFIPTEVIKNLYRLTGQNYSGAEHRYFVDGTPIVRDVYMGDDTGWRTVLIGTLRAGGRSLFALDITDPSQIKLLWEFGTAKDADLGYTFAQP EIVRLHTGEWAVLQGNGYDSVNDKAALLIIDIKTGDLIKKITVPDTVENNVTLANGLSSVRGADNNGDGLVDYAYAGDLLGNLWRFDLVKSSPSSDTPVA VDPFARTNTEVSSTTKSDFKLAYGNRPLFVAKDKAGKRQPITIQPSLVRHPTGYGYLVLIGTGKYFEASDANVDTSRAMTLYGIWDRKTKRQKTDINTVL AGSRFTSGTTPGRLKEQSFIEQQDNAVIGDDVQSANRDIKLLSNGIPQWYRTPAPNETLSIPNDDGAVNQWGWALDMAVTDTSGTARLEGEMIINNMTAS GSILFLSSLTPNQDPCQAGADTWLYGVDAHTGGRTRFNVLDLNADRIVNSTDEYDAKVVSGMRFPALGGFTLAPGNKVFGSDGASNPFTVGDDPNSSGRQ SWHIVPEDFQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site