Pseudomonas mendocina NK-01, MDS_0516
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina NK-01 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCATGACCATCGTGCGCGAGGAAATCTTCGGTCCGGTGATGAGCATCCTCATCTACGACGACGAAGAGGAAGTGATTCGCCGCGCCAACGACACCGA TTACGGCCTCGCTGCCGGCGTGGTGACCCGCGACCTCAACCGTGCACACCGGGTGATCCACAAGCTGGAAGCCGGCATCTGCTGGATCAACACCTGGGGC GAGTCGCCAGCCGAGATGCCGGTGGGCGGCTACAAGCAATCCGGTGTCGGCCGCGAGAACGGTCTGGTCACCCTCGGCCACTACACCCGCATCAAGTCGG TGCAGTTGGAAATGGGCGATTACGCGTCAGTGTTCTGAACACCGTTTTGTGGGAAGGGCTTCAGCCGCGACCCATTTCGCGGCTAAAGCGGTTCACCGAC CGGCCCGCCCATGGATTGAATCGCCGCCCCGCAGCCCGGATGCCATCCGGGGACATTCATCCAGGTTTACCCGGCGGGCAGCCGGGCAACAGGAGGAAGC
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| DNA Sequence for Gene |
>MDS_0516
ATGACCCAGGAATTCGACTACATCATCATCGGCGCCGGCTCGGCCGGTAACGTCCTGGCCACTCGCCTGACCGAGGATGCCGACGTCAGCGTGCTGCTGC TCGAAGCCGGCGGCCCCGACTATCGTCTCGATTTCCGCACTCAGATGCCCGCTGCCCTGGCCTTCCCGCTACAGGGTCGACGCTACAACTGGGCCTACGA AACCGATCCAGAACCTTACATGAACAACCGCCGCATGGAATGTGGACGCGGCAAGGGGCTGGGCGGCTCGTCGTTGATCAACGGCATGTGCTACATCCGC GGCAACGCGCTGGACTTCGACAACTGGGCCAAGCAGCCAGGCCTGGAAGACTGGAGCTACCTCGACTGCCTGCCGTACTTCCGCAAGGCCGAGACTCGCG ACATTGGCGCCAACGATTACCACGGCGACAGCGGTCCGGTCAGCGTGACCACGCCCAAGGCCGGCAACAATCCGCTGTTCCACGCCATGGTCGAGGCCGG CGTGCAGGCCGGCTACCCGCGTACCGACGACCTCAACGGCTACCAGCAGGAAGGCTTCGGTCCGATGGACCGCACCGTGACCCCGGAAGGTCGCCGCGCC AGCACCGCTCGCGGCTACCTGGACCAGGCCCGCGAGCGGCCGAACCTGACCATCGTCACCCACGCCACCACCGACCGCATCCTGTTCGAAGGCAAGCGCG CGATTGGCGTCAGCTACCTGCGCGGCAATGGCAACACCACCATCCGCGCCCGCGCTCGCCGCGAAGTCCTGCTGTGCGCTGGTGCCATTGCCTCGCCACA GATTCTGCAGCGTTCCGGCGTCGGCCCCAGCGACCTGCTGCTGGGCCTGGACATCGACGTGGTGCATTATCTGCCCGGCGTTGGTGCCAACCTGCAGGAC CATCTGGAAATGTACCTGCAGTACGCCTGCACCCAGCCAGTGTCGCTGTACCCGGCACTCAAGCTGCTCAACCAGCCGGGCATCGGCGCACAATGGCTGT TCACCGGTAACGGCATCGGCGCCAGCAATCAGTTCGAGGCCGGCGGCTTCATCCGCACCCGCCCGGAGTTCACCTGGCCCAACATCCAGTTCCACTTCCT GCCGGTGGCGATCAACTACAACGGCAGCAACGCGGTGAACGAGCACGGTTTCCAGGCCCACGTCGGCTCCATGCGCTCACCGAGCCGTGGCCGCGTGCGC CTGAAGTCCAAGGACCCGCGCCAGCACCCGAGCATCCTGTTCAACTACATGAGCCATGAGCAGGACTGGCAGGAATTTCGCGACGCCATCCGTATCACCC GCGAGATCATGGCGCAGCCGGCACTGGACCCTTACCGCGGCCGCGAGATCAGCCCCGGCATCGACTGCCAGAGCGACGCGGAACTCGATGCCTTCATTCG CGAGCATGCGGAAACCGCCTTCCACCCCTCATGCTCGTGCAAGATGGGCGAGGACGACATGGCGGTGGTCGACGGCCAGGGCCGCGTGCACGGTTTACAA GGCCTGCGTGTGGTGGATGCGTCGATCATGCCGGAGATCATCACCGGCAACCTCAACGCCACCACCATCATGATCGCCGAGAAGATCGCCGACAAAATCC GCGGTCGCCAACCACTGCCGCGCAGCACAGCGCCCTACTTCGTCGCAGGCGATCGCCCCGTGCGTGGCACGCCGCTGCGCAGCCAGCACGACAGGCTAGT CGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCTGACGAATCATCCAGTGCCCCTCGGGCGGCATCAGCCGACCGAGGTCGAAGCGCTCCAGCGATCCGGCATCGAGCATCTCGATGCGCGGGCTCACC AGTTGCGGCAGCTTCTCGCCTTGCAGGCCACGCACCGCCAGATCCAGTGCAATACGCGCCTGAATCACCGGTGAGTCGGTCGGCGCTGCCAGCACCTGGC CTTCGCGAATCTGCTCCAGTACCCGCTCGGTGGCGTAAAGCGACAACACCTGAGCATCGGAGCCGATGTTGCGCACCAGTTGCGCGGCGAAGGCCGCCGC TTCAGCATTGGCGATCACGTAATCGAGATGGGGATGCTGCTTGAACAGTTCCCGCGCCAGTTGCGCCTGCCGGCTGCGATCCACCGGGCCGTAACCGCCA TGGGCCAGGGTCACCCTGGTTCCGGGCAGCGCGTCGCGCAGACCGCGCTCGGCATCCTGCACCCAACCAGCATCGGCCGGCCCCGGCAGCCAGCCGACCT
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| Amino Acid Sequence |
>choline dehydrogenase
MTQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPYMNNRRMECGRGKGLGGSSLINGMCYIR GNALDFDNWAKQPGLEDWSYLDCLPYFRKAETRDIGANDYHGDSGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPEGRRA STARGYLDQARERPNLTIVTHATTDRILFEGKRAIGVSYLRGNGNTTIRARARREVLLCAGAIASPQILQRSGVGPSDLLLGLDIDVVHYLPGVGANLQD HLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEAGGFIRTRPEFTWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRVR LKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDPYRGREISPGIDCQSDAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGLQ GLRVVDASIMPEIITGNLNATTIMIAEKIADKIRGRQPLPRSTAPYFVAGDRPVRGTPLRSQHDRLVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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