Pseudomonas mendocina NK-01, MDS_0418

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00862
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 137 245 2.0E-29
FunFam G3DSA:3.40.50.2300:FF:000008 Two-component response regulator OmpR - - 10 91 3.1E-42
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 139 241 7.09E-26
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 12 123 4.0E-44
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 151 239 6.7897E-27
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 14 124 5.3E-31
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 167 239 4.4E-22
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 13 238 2.6E-51
FunFam G3DSA:1.10.10.10:FF:000099 Two-component system response regulator TorR - - 135 242 3.9E-30
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 162 239 2.0E-25
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 8 133 1.07E-42
CDD cd17574 REC_OmpR - - 15 113 7.63312E-47
Gene3D G3DSA:3.40.50.2300 - - - 10 91 1.3E-21
Gene3D G3DSA:6.10.250.690 - - - 92 129 1.0E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.